RLG00000012261

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004878
Physical Location & Seq
Reverse (-)
16850651 .. 16851211
561 bp
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UTR
Exon/CDS
Intron
RLM00000012261

Sequence Viewer

Length: 408 bp
ATGTCGTTTTGCACCGATCTTTATCCTGCTGGAGCTGAGTCGCCGGTGACCACTGGACCTCCATCTCCGACTAGAAAGCTACCTAGAGACAAAATGGAAGGCGACGACAATCATGAAGACGGTCGAAGCTGCGGCCGAGATTCGGTGCTCGAGACTCGATCTGTGCCTACAGCTTCTTCTTCCTCATCGCAGATTTTGTTCTCATTTCCCGCTGCCAAAACCCTAACCCGAACGCCGCGTCGGCTTTCCAGTGTCGCAAATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGACATGGCATTCAAGGCCTCGGGAGCCTACAAAAACTGCAAGCCGTGTTCAAGGCTGTGTGGCGACCACCGAAACCGGAACTGTTCGGACTCTGATATGTCGGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

136

Amino Acids

14.54

Weight (kDa)

8.9

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 97 - 115 4.2e-06 Transcription factor BRX N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 3 cut(s) 132, 210, 236
AcoI YGGCCR 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 310, 348
AluBI AGCT 4 cut(s) 35, 79, 129, 173
AluI AGCT 4 cut(s) 35, 79, 129, 173
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 81, 146
Ama87I CYCGRG 2 cut(s) 149, 316
AoxI GGCC 3 cut(s) 133, 273, 312
ApeKI GCWGC 2 cut(s) 129, 212
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 2 cut(s) 149, 316
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 116, 199
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 81, 146
BfaI CTAG 2 cut(s) 72, 84
BfmI CTRYAG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 4 cut(s) 130, 133, 213, 236
BlsI GCNGC 4 cut(s) 131, 134, 214, 237
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 2 cut(s) 149, 316
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 51, 285
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 58, 249
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 58, 249
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 116, 199
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 2 cut(s) 124, 136
BshFI GGCC 3 cut(s) 135, 275, 314
BsiEI CGRYCG 2 cut(s) 124, 136
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 2 cut(s) 149, 316
BsiSI CCGG 2 cut(s) 44, 373
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 81, 146
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 3 cut(s) 135, 275, 314
BsoBI CYCGRG 2 cut(s) 149, 316
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 16, 158, 291
BspACI CCGC 3 cut(s) 132, 210, 236
BspANI GGCC 3 cut(s) 135, 275, 314
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 58, 249
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 16, 158, 291
Bst4CI ACNGT 2 cut(s) 122, 380
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 46
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 3 cut(s) 19, 161, 294
BstMAI GTCTC 2 cut(s) 81, 146
BstMBI GATC 3 cut(s) 16, 158, 291
BstMCI CGRYCG 2 cut(s) 124, 136
BstMWI GCNNNNNNNGC 3 cut(s) 241, 311, 320
BstPI GGTNACC 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 116, 199
BstV2I GAAGAC 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 3 cut(s) 135, 275, 314
BtgZI GCGATG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 51, 256
Cac8I GCNNGC 1 cut(s) 338
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 227
CviAII CATG 2 cut(s) 113, 301
DdeI CTNAG 1 cut(s) 36
DpnI GATC 3 cut(s) 18, 160, 293
DpnII GATC 3 cut(s) 16, 158, 291
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 56
Eco52I CGGCCG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 149, 316
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
FaeI CATG 2 cut(s) 116, 304
FaiI YATR 3 cut(s) 114, 302, 395
FatI CATG 2 cut(s) 112, 300
FauI CCCGC 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 130, 133, 213, 236
Fsp4HI GCNGC 4 cut(s) 130, 133, 213, 236
FspBI CTAG 2 cut(s) 72, 84
GluI GCNGC 4 cut(s) 130, 133, 213, 236
GsuI CTGGAG 2 cut(s) 51, 285
HaeIII GGCC 3 cut(s) 135, 275, 314
HapII CCGG 2 cut(s) 44, 373
HgaI GACGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 116, 304
HinfI GANTC 4 cut(s) 38, 140, 154, 386
HpaII CCGG 2 cut(s) 44, 373
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 69, 385, 391
Hpy188III TCNNGA 4 cut(s) 113, 151, 289, 318
Hpy99I CGWCG 2 cut(s) 107, 243
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 122, 380
HpyCH4V TGCA 3 cut(s) 12, 285, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 311, 320
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 2 cut(s) 116, 304
Kzo9I GATC 3 cut(s) 16, 158, 291
LmnI GCTCC 2 cut(s) 32, 320
LpnPI CCDG 7 cut(s) 15, 39, 39, 57, 249, 262, 386
Lsp1109I GCAGC 2 cut(s) 116, 199
LweI GCATC 1 cut(s) 294
MaeI CTAG 2 cut(s) 72, 84
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 18, 160, 293
MboI GATC 3 cut(s) 16, 158, 291
MboII GAAGA 3 cut(s) 128, 168, 171
MhlI GDGCHC 1 cut(s) 150
MlyI GAGTC 3 cut(s) 47, 148, 380
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 4 cut(s) 69, 193, 265, 325
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 44, 373
Mva1269I GAATGC 1 cut(s) 305
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 241, 311, 320
NdeII GATC 3 cut(s) 16, 158, 291
NlaIII CATG 2 cut(s) 116, 304
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 314
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 131, 134, 214, 237
PleI GAGTC 3 cut(s) 46, 148, 380
PpsI GAGTC 3 cut(s) 46, 148, 380
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 56
SatI GCNGC 4 cut(s) 130, 133, 213, 236
Sau3AI GATC 3 cut(s) 16, 158, 291
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 3 cut(s) 47, 148, 380
SduI GDGCHC 1 cut(s) 150
SetI ASST 6 cut(s) 37, 61, 81, 85, 131, 175
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 149
SgrAI CRCCGGYG 1 cut(s) 43
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 3 cut(s) 132, 210, 236
SspMI CTAG 2 cut(s) 72, 84
StuI AGGCCT 1 cut(s) 314
TaaI ACNGT 2 cut(s) 122, 380
TaqI TCGA 3 cut(s) 124, 150, 157
TauI GCSGC 2 cut(s) 135, 238
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 2 cut(s) 58, 256
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 129, 212
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 2 cut(s) 58, 256
VpaK11BI GGWCC 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 2 cut(s) 72, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.