RchiOBHm_Chr2g0114841

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004881
Physical Location & Seq
Forward (+)
26717889 .. 26720404
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48805

Sequence Viewer

Length: 705 bp
ATGACATTGGTTGTAGCTATTTCAAGAGGTTTAAATGGTGTTGGACTTGCCATAGTCATTCCTGCCATTCAGTCACTTGTTGCTGACTCAACAGATGATAACAACTGTGGTACAACATTTGGATGGTTACAACTAACAGGAAATCTTGGCTCCATAAATAGGTGGTCTTTTTTCTTACTAATAGCCTCCACTTCAGTAATAGGTATAGATGGTTGGAGAATTGCATTCCATCTGGTTGGGCTCATTAGTGTCATAGTCGGTATATTGGTTCGTCTCTTTGCTAATGATCCGCACTATGTACAGAACAATGGTAAAGCTAAAGATGAAATGCCACACACTTTTTCAGAAGAAGTGAAGGACCTGATTAAAGAATCCAAGTTGGTTATCAAAATCCCAACTTTTCAAATACTCATTGCTCAGGGTGTCTTTGGATCATTCCCCTTGTCAGTTCTTTGGACCATATTTATAATTGACGCCTCACTTGGAAGTCTCTTTGGAGGAAAAATGGGGGATGTCCTTGCAAAACCGTTTCCCAATGCTGGGAGGATAGTTCTTTCACAGATAAGTGCAGGATCGGCCATTCCTTTTGCAGCTCTTTTGCTGCTGGGTTTGCCTGATGACCCATCCACCGGCTTCATCAAGCACGGACACAAGGTTCCGTGCCTGGGCTTCATGCATGGGCTGGTATTGTTCATCATGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

234

Amino Acids

24.98

Weight (kDa)

7.01

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 4 - 167 2.3e-12 Major Facilitator Superfamily
Sugar_tr PF00083 4 - 109 9.1e-06 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AciI CCGC 1 cut(s) 290
AclWI GGATC 3 cut(s) 281, 439, 580
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 2 cut(s) 112, 300
AfiI CCNNNNNNNGG 5 cut(s) 159, 539, 540, 629, 665
AgsI TTSAA 2 cut(s) 24, 404
AjnI CCWGG 1 cut(s) 663
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 3 cut(s) 17, 317, 593
AluI AGCT 3 cut(s) 17, 317, 593
Alw26I GTCTC 2 cut(s) 278, 494
AlwI GGATC 3 cut(s) 281, 439, 580
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 590, 601
AspS9I GGNCC 2 cut(s) 358, 456
AvaII GGWCC 2 cut(s) 358, 456
BanII GRGCYC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 588, 602
BccI CCATC 4 cut(s) 117, 203, 237, 631
BciT130I CCWGG 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 278, 494
BisI GCNGC 2 cut(s) 591, 602
BlsI GCNGC 2 cut(s) 592, 603
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 2 cut(s) 358, 456
BmgT120I GGNCC 2 cut(s) 358, 456
BmiI GGNNCC 2 cut(s) 151, 657
BmrFI CCNGG 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 664
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 539, 540, 629, 665
Bse118I RCCGGY 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 3 cut(s) 128, 517, 623
BseLI CCNNNNNNNGG 5 cut(s) 159, 539, 540, 629, 665
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 588, 602
BseYI CCCAGC 2 cut(s) 539, 604
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 1 cut(s) 578
BsiSI CCGG 1 cut(s) 630
BslI CCNNNNNNNGG 5 cut(s) 159, 539, 540, 629, 665
BsmAI GTCTC 2 cut(s) 278, 494
BsmBI CGTCTC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 3 cut(s) 286, 431, 572
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 151, 657
BspPI GGATC 3 cut(s) 281, 439, 580
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 3 cut(s) 286, 431, 572
BssNI GRCGYC 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 107, 528
BstACI GRCGYC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 128, 517, 623
BstKTI GATC 3 cut(s) 289, 434, 575
BstMAI GTCTC 2 cut(s) 278, 494
BstMBI GATC 3 cut(s) 286, 431, 572
BstMWI GCNNNNNNNGC 2 cut(s) 575, 610
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 588, 602
BstXI CCANNNNNNTGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 578
BtsCI GGATG 3 cut(s) 128, 517, 623
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 358, 456
CseI GACGC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 111, 299
CviAII CATG 3 cut(s) 673, 677, 697
CviQI GTAC 2 cut(s) 111, 299
DdeI CTNAG 1 cut(s) 417
DpnI GATC 3 cut(s) 288, 433, 574
DpnII GATC 3 cut(s) 286, 431, 572
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 358, 456
Eco57I CTGAAG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 3 cut(s) 676, 680, 700
FatI CATG 3 cut(s) 672, 676, 696
Fnu4HI GCNGC 2 cut(s) 591, 602
FokI GGATG 3 cut(s) 135, 524, 610
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 591, 602
GluI GCNGC 2 cut(s) 591, 602
GsaI CCCAGC 2 cut(s) 543, 608
HaeIII GGCC 1 cut(s) 578
HapII CCGG 1 cut(s) 630
HgaI GACGC 1 cut(s) 482
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 3 cut(s) 676, 680, 700
HinfI GANTC 2 cut(s) 86, 371
HpaII CCGG 1 cut(s) 630
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 107, 528
HpyCH4V TGCA 5 cut(s) 224, 521, 569, 590, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 610
HpyF3I CTNAG 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 3 cut(s) 676, 680, 700
Kzo9I GATC 3 cut(s) 286, 431, 572
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 2 cut(s) 588, 602
MaeIII GTNAC 2 cut(s) 72, 126
MalI GATC 3 cut(s) 288, 433, 574
MboI GATC 3 cut(s) 286, 431, 572
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 219, 468
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 22, 194
MnlI CCTC 5 cut(s) 20, 196, 487, 491, 537
Mph1103I ATGCAT 1 cut(s) 678
MseI TTAA 2 cut(s) 32, 366
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 575, 610
NdeII GATC 3 cut(s) 286, 431, 572
NlaIII CATG 3 cut(s) 676, 680, 700
NlaIV GGNNCC 2 cut(s) 151, 657
NmuCI GTSAC 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 678
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 592, 603
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 358
PsiI TTATAA 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 2 cut(s) 539, 604
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 151, 657
PspPI GGNCC 2 cut(s) 358, 456
PspPPI RGGWCCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 112, 300
RsaNI GTAC 2 cut(s) 111, 299
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 2 cut(s) 32, 366
SatI GCNGC 2 cut(s) 591, 602
Sau3AI GATC 3 cut(s) 286, 431, 572
Sau96I GGNCC 2 cut(s) 358, 456
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 1 cut(s) 243
SetI ASST 8 cut(s) 19, 31, 164, 205, 319, 363, 595, 657
SinI GGWCC 2 cut(s) 358, 456
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 2 cut(s) 219, 468
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 107, 528
TasI AATT 2 cut(s) 219, 468
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 32, 366
Tru9I TTAA 2 cut(s) 32, 366
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 590, 601
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 4 cut(s) 339, 625, 661, 682
TspGWI ACGGA 2 cut(s) 648, 660
VpaK11BI GGWCC 2 cut(s) 358, 456
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.