C3HC zinc finger-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341 |
| rosa_laevigata | RLG00000018218 |
| rosa_multiflora | Rmu_sc0007341.1_g000037 |
| rosa_roxburghii | Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600 |
| rosa_rugosa | Rorug04G0458600 Rorug07G0190100 |
| rosa_samantha | Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300 |
| rosa_wichuraiana | Rw5G016900 Rw6G005030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 264 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AgsI | TTSAA | 1 cut(s) | 172 |
| AjnI | CCWGG | 1 cut(s) | 41 |
| AluBI | AGCT | 2 cut(s) | 94, 234 |
| AluI | AGCT | 2 cut(s) | 94, 234 |
| Alw21I | GWGCWC | 1 cut(s) | 70 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 1 cut(s) | 264 |
| Bbv12I | GWGCWC | 1 cut(s) | 70 |
| BciT130I | CCWGG | 1 cut(s) | 43 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 72, 195 |
| Bme1390I | CCNGG | 1 cut(s) | 43 |
| BmrFI | CCNGG | 1 cut(s) | 43 |
| BmsI | GCATC | 2 cut(s) | 31, 59 |
| BsaBI | GATNNNNATC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 1 cut(s) | 41 |
| Bse8I | GATNNNNATC | 1 cut(s) | 255 |
| BseBI | CCWGG | 1 cut(s) | 43 |
| BseDI | CCNNGG | 1 cut(s) | 41 |
| BseJI | GATNNNNATC | 1 cut(s) | 255 |
| BseMII | CTCAG | 1 cut(s) | 104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 70 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 70 |
| Bsp1407I | TGTACA | 1 cut(s) | 28 |
| Bsp143I | GATC | 2 cut(s) | 144, 256 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BsrGI | TGTACA | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 41 |
| BssMI | GATC | 2 cut(s) | 144, 256 |
| Bst2UI | CCWGG | 1 cut(s) | 43 |
| BstAUI | TGTACA | 1 cut(s) | 28 |
| BstDEI | CTNAG | 1 cut(s) | 90 |
| BstKTI | GATC | 2 cut(s) | 147, 259 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 2 cut(s) | 144, 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 91, 204 |
| BstNI | CCWGG | 1 cut(s) | 43 |
| BstSCI | CCNGG | 1 cut(s) | 41 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviAII | CATG | 1 cut(s) | 26 |
| CviJI | RGCY | 3 cut(s) | 94, 198, 234 |
| CviKI_1 | RGCY | 3 cut(s) | 94, 198, 234 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 1 cut(s) | 90 |
| DpnI | GATC | 2 cut(s) | 146, 258 |
| DpnII | GATC | 2 cut(s) | 144, 256 |
| EcoRII | CCWGG | 1 cut(s) | 41 |
| FaeI | CATG | 1 cut(s) | 29 |
| FaiI | YATR | 3 cut(s) | 27, 220, 268 |
| FatI | CATG | 1 cut(s) | 25 |
| FspBI | CTAG | 2 cut(s) | 72, 195 |
| Hin1II | CATG | 1 cut(s) | 29 |
| HinfI | GANTC | 1 cut(s) | 11 |
| Hpy188I | TCNGA | 3 cut(s) | 144, 149, 177 |
| Hpy188III | TCNNGA | 1 cut(s) | 106 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 2 cut(s) | 50, 212 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 91, 204 |
| HpyF3I | CTNAG | 1 cut(s) | 90 |
| Hsp92II | CATG | 1 cut(s) | 29 |
| Kzo9I | GATC | 2 cut(s) | 144, 256 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LpnPI | CCDG | 3 cut(s) | 28, 55, 165 |
| LweI | GCATC | 2 cut(s) | 31, 59 |
| MaeI | CTAG | 2 cut(s) | 72, 195 |
| MaeIII | GTNAC | 1 cut(s) | 238 |
| MalI | GATC | 2 cut(s) | 146, 258 |
| MboI | GATC | 2 cut(s) | 144, 256 |
| MboII | GAAGA | 2 cut(s) | 28, 136 |
| MhlI | GDGCHC | 1 cut(s) | 70 |
| MnlI | CCTC | 1 cut(s) | 68 |
| MseI | TTAA | 1 cut(s) | 18 |
| MspR9I | CCNGG | 1 cut(s) | 43 |
| MvaI | CCWGG | 1 cut(s) | 43 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 91, 204 |
| NdeII | GATC | 2 cut(s) | 144, 256 |
| NlaIII | CATG | 1 cut(s) | 29 |
| PfeI | GAWTC | 1 cut(s) | 11 |
| Psp6I | CCWGG | 1 cut(s) | 41 |
| PspGI | CCWGG | 1 cut(s) | 41 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| SaqAI | TTAA | 1 cut(s) | 18 |
| Sau3AI | GATC | 2 cut(s) | 144, 256 |
| ScrFI | CCNGG | 1 cut(s) | 43 |
| SduI | GDGCHC | 1 cut(s) | 70 |
| SetI | ASST | 6 cut(s) | 61, 73, 96, 191, 196, 236 |
| SfaNI | GCATC | 2 cut(s) | 31, 59 |
| SgeI | CNNG | 9 cut(s) | 38, 54, 55, 84, 94, 118, 164, 207, 243 |
| SspMI | CTAG | 2 cut(s) | 72, 195 |
| StyD4I | CCNGG | 1 cut(s) | 41 |
| TaqI | TCGA | 2 cut(s) | 9, 249 |
| TatI | WGTACW | 1 cut(s) | 28 |
| TfiI | GAWTC | 1 cut(s) | 11 |
| Tru1I | TTAA | 1 cut(s) | 18 |
| Tru9I | TTAA | 1 cut(s) | 18 |
| TspDTI | ATGAA | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 72, 195 |