Rh7BG058300

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004881
Physical Location & Seq
Forward (+)
3872335 .. 3875213
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG058300.1

Sequence Viewer

Length: 303 bp
ATGTACCAGAATTTTACTATCTCATTATTCCAGTTCACAAGTGGACGTGCACACGCATTAGTAACTTCTGCATTTAGTCACATCCACGTTGGGCACATCGTTTCTAACATATCTTTTTGGGATGAATATTGGAAGAGTTTTTGGGCCTGGATTTTTGCTCAAGTTGTATCTAGCTGGAGCTATTGGTGGTTCAGTCTTTTACTTGGTGCACCATGCCTGGACGTGCTCACTGCCAGAGGTACCATGATACTCAATATAACAACTCAATCGGTTTCCTGTGATCCAGCAATTATTAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

100

Amino Acids

11.47

Weight (kDa)

6.37

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 5, 241
AjiI CACGTC 2 cut(s) 47, 223
AjnI CCWGG 2 cut(s) 146, 216
AluBI AGCT 2 cut(s) 174, 180
AluI AGCT 2 cut(s) 174, 180
Alw21I GWGCWC 3 cut(s) 52, 211, 228
Alw44I GTGCAC 2 cut(s) 48, 207
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 2 cut(s) 48, 207
ApoI RAATTY 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 144
BaeGI GKGCMC 3 cut(s) 52, 96, 211
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 3 cut(s) 52, 211, 228
BciT130I CCWGG 2 cut(s) 148, 218
BfaI CTAG 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 148, 218
BmgBI CACGTC 2 cut(s) 47, 223
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 148, 218
BpmI CTGGAG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 148, 218
BseGI GGATG 2 cut(s) 81, 127
BseNI ACTGG 1 cut(s) 31
BseSI GKGCMC 3 cut(s) 52, 96, 211
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 3 cut(s) 52, 211, 228
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 4 cut(s) 52, 96, 211, 228
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 31
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 148, 218
Bst6I CTCTTC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 81, 127
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 2 cut(s) 148, 218
BstSCI CCNGG 2 cut(s) 146, 216
BstSLI GKGCMC 3 cut(s) 52, 96, 211
BsuRI GGCC 1 cut(s) 146
BtrI CACGTC 2 cut(s) 47, 223
BtsCI GGATG 2 cut(s) 81, 127
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 4, 240
CviAII CATG 2 cut(s) 213, 244
CviJI RGCY 3 cut(s) 146, 174, 180
CviKI_1 RGCY 3 cut(s) 146, 174, 180
CviQI GTAC 2 cut(s) 4, 240
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 146, 216
FaeI CATG 2 cut(s) 216, 247
FaiI YATR 4 cut(s) 110, 214, 245, 257
FatI CATG 2 cut(s) 212, 243
FokI GGATG 2 cut(s) 68, 134
FspBI CTAG 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 2 cut(s) 216, 247
Hpy166II GTNNAC 4 cut(s) 36, 44, 50, 209
Hpy8I GTNNAC 4 cut(s) 36, 44, 50, 209
HpyCH4IV ACGT 3 cut(s) 46, 87, 222
HpyCH4V TGCA 3 cut(s) 50, 71, 209
HpySE526I ACGT 3 cut(s) 46, 87, 222
Hsp92II CATG 2 cut(s) 216, 247
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 177
MaeI CTAG 1 cut(s) 171
MaeII ACGT 3 cut(s) 46, 87, 222
MaeIII GTNAC 2 cut(s) 61, 77
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 4 cut(s) 52, 96, 211, 228
MluCI AATT 2 cut(s) 10, 288
MnlI CCTC 1 cut(s) 230
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 148, 218
MvaI CCWGG 2 cut(s) 148, 218
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 216, 247
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 146, 216
PspGI CCWGG 2 cut(s) 146, 216
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 5, 241
RsaNI GTAC 2 cut(s) 4, 240
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 148, 218
SduI GDGCHC 4 cut(s) 52, 96, 211, 228
SetI ASST 6 cut(s) 49, 90, 176, 182, 225, 241
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 10, 288
SspI AATATT 1 cut(s) 128
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 146, 216
TaiI ACGT 3 cut(s) 49, 90, 225
TasI AATT 2 cut(s) 10, 288
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 235
VneI GTGCAC 2 cut(s) 48, 207
XapI RAATTY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.