Rh2DG439800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004881
Physical Location & Seq
Reverse (-)
63831132 .. 63831386
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG439800.1

Sequence Viewer

Length: 255 bp
ATGGTGGAAATCCGGGTTCAGCGTCGAGGTGACTGGATGGAACGTCTTCGTGTCGACCTCCACGTGTCGGAACTTCGTGTTACGGCCGCGAGTGGCGACGATTATTCTTTTTCCATCGTGCATAGTGGCCGGAGTGAAGCAGTGGAGACCCGATGGAGTGACCCGGGGGGGAGTAAAGTCAACGGGTATGCGGAGGACTCGAAATCTTGGGGGAAATCAATTCGGAAAATGGTTCACCAGCCGTCGTCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

8.16

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 87, 191
AcoI YGGCCR 2 cut(s) 84, 127
AcvI CACGTG 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 2 cut(s) 84, 127
Asp700I GAANNNNTTC 1 cut(s) 45
AsuC2I CCSGG 3 cut(s) 14, 164, 165
AsuHPI GGTGA 2 cut(s) 41, 227
AvaI CYCGRG 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 38
BccI CCATC 3 cut(s) 31, 122, 147
BceAI ACGGC 2 cut(s) 99, 226
BcnI CCSGG 3 cut(s) 14, 164, 165
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 14, 164, 165
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 3 cut(s) 14, 164, 165
BpiI GAAGAC 1 cut(s) 38
BpuMI CCSGG 3 cut(s) 14, 164, 165
BsaAI YACGTR 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 163, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 163, 164
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 86, 129
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 13, 130, 164
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 86, 129
Bso31I GGTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 163
BspACI CCGC 2 cut(s) 87, 191
BspANI GGCC 2 cut(s) 86, 129
BspFNI CGCG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 163, 164
BstBAI YACGTR 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 12, 162, 163
BstUI CGCG 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 38
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 86, 129
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 163
CseI GACGC 1 cut(s) 11
CviJI RGCY 3 cut(s) 86, 129, 241
CviKI_1 RGCY 3 cut(s) 86, 129, 241
DdeI CTNAG 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 84, 127
EagI CGGCCG 1 cut(s) 84
EclXI CGGCCG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 140
Eco52I CGGCCG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 163
FaiI YATR 2 cut(s) 123, 189
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 86, 129
HapII CCGG 3 cut(s) 13, 130, 164
HgaI GACGC 1 cut(s) 11
HincII GTYRAC 2 cut(s) 55, 181
HindII GTYRAC 2 cut(s) 55, 181
HinfI GANTC 1 cut(s) 197
HpaII CCGG 3 cut(s) 13, 130, 164
HphI GGTGA 2 cut(s) 41, 227
Hpy166II GTNNAC 3 cut(s) 55, 181, 235
Hpy188I TCNGA 2 cut(s) 70, 225
Hpy8I GTNNAC 3 cut(s) 55, 181, 235
Hpy99I CGWCG 4 cut(s) 27, 101, 247, 250
HpyCH4IV ACGT 2 cut(s) 43, 63
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 43, 63
LpnPI CCDG 5 cut(s) 19, 26, 143, 177, 251
MaeII ACGT 2 cut(s) 43, 63
MaeIII GTNAC 3 cut(s) 29, 79, 158
MboII GAAGA 1 cut(s) 38
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 20, 68, 187
MroXI GAANNNNTTC 1 cut(s) 45
MspI CCGG 3 cut(s) 13, 130, 164
MspR9I CCNGG 3 cut(s) 14, 164, 165
MvnI CGCG 1 cut(s) 89
NciI CCSGG 3 cut(s) 14, 164, 165
NmuCI GTSAC 2 cut(s) 29, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 45
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 191
PmaCI CACGTG 1 cut(s) 64
PmlI CACGTG 1 cut(s) 64
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 64
PspCI CACGTG 1 cut(s) 64
SalI GTCGAC 1 cut(s) 53
SatI GCNGC 1 cut(s) 87
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 3 cut(s) 14, 164, 165
SetI ASST 4 cut(s) 31, 46, 60, 66
SmaI CCCGGG 1 cut(s) 165
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 87, 191
StyD4I CCNGG 3 cut(s) 12, 162, 163
TaiI ACGT 2 cut(s) 46, 66
TaqI TCGA 3 cut(s) 25, 54, 200
TasI AATT 1 cut(s) 219
TauI GCSGC 1 cut(s) 89
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 2 cut(s) 29, 158
Tsp45I GTSAC 2 cut(s) 29, 158
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 1 cut(s) 147
XmaI CCCGGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.