Rh5CG213300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004881
Physical Location & Seq
Forward (+)
21596017 .. 21610284
14268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG213300.1

Sequence Viewer

Length: 246 bp
ATGAGTGGACTAGTGGAGTCGGGAGAGCCGGCTGAGCCGCAGGCGGCGAGAGGAGGAGGAAGTGGGAGAGATTCGTTAAATACGATTCGGGTAATGAAGCACCTGGATGGAAACAACCACAGTCAGCTTTACAATGTCAAGAAGGGTAGAAAGAAGTTGAAGGATAGACCAGGTCGACAACTGAAGGAACCCAATATAGGAAAAGGCACTATGATCCCGCAGCATGCACGGTCGGAGATACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

10.27

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 175
AciI CCGC 3 cut(s) 38, 44, 218
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 160
AhlI ACTAGT 1 cut(s) 10
AjnI CCWGG 2 cut(s) 102, 169
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 104, 171
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 38, 45, 221
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 3 cut(s) 39, 46, 222
Bme1390I CCNGG 2 cut(s) 104, 171
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 104, 171
Bpu1102I GCTNAGC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 28
BseBI CCWGG 2 cut(s) 104, 171
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 66, 69
BseXI GCAGC 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 213
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 3 cut(s) 38, 44, 218
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 104, 171
Bst4CI ACNGT 2 cut(s) 122, 231
BstC8I GCNNGC 3 cut(s) 30, 42, 225
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 104, 171
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 102, 169
BstV1I GCAGC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 30, 42, 225
Cfr10I RCCGGY 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 169
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 28, 32, 37, 127
CviKI_1 RGCY 4 cut(s) 28, 32, 37, 127
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 102, 169
FaeI CATG 1 cut(s) 227
FaiI YATR 3 cut(s) 197, 212, 225
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 225
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 38, 45, 221
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 38, 45, 221
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 38, 45, 221
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 3 cut(s) 17, 71, 85
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 8, 176
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 21, 139
Hpy8I GTNNAC 2 cut(s) 8, 176
HpyAV CCTTC 3 cut(s) 136, 154, 178
HpyCH4III ACNGT 2 cut(s) 122, 231
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 1 cut(s) 227
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 26, 42, 89, 116, 156, 183
Lsp1109I GCAGC 1 cut(s) 232
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 1 cut(s) 11
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 3 cut(s) 44, 47, 50
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 104, 171
MvaI CCWGG 2 cut(s) 104, 171
MwoI GCNNNNNNNGC 1 cut(s) 34
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 71, 85
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 3 cut(s) 39, 46, 222
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 102, 169
PspGI CCWGG 2 cut(s) 102, 169
PspN4I GGNNCC 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 105
SalI GTCGAC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 38, 45, 221
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 104, 171
SetI ASST 3 cut(s) 105, 129, 175
SexAI ACCWGGT 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 105
SpeI ACTAGT 1 cut(s) 10
SphI GCATGC 1 cut(s) 227
SsiI CCGC 3 cut(s) 38, 44, 218
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 102, 169
TaaI ACNGT 2 cut(s) 122, 231
TaqI TCGA 1 cut(s) 175
TauI GCSGC 2 cut(s) 40, 47
TfiI GAWTC 2 cut(s) 71, 85
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 110
Tth111I GACNNNGTC 1 cut(s) 171
XceI RCATGY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.