Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007341.1

Orthogroup ID

OG0004881

Physical Location & Seq

Genomic Coordinates Forward (+)

138617 .. 139505

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007341.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgctgtccccagattccaaccttggttcctccgctgttattatgctctccatgaaatgttgcataaaagaggctgcaattgcgacgatcctcttcttcgcgtggtggtggtgctcgggattggagatgcaattaaggtcgactgcgacagcaaccaatccagcacaccgccgatcggagattgagggcagagggacgacggagaaagataaagaagaggaagtaatcggacttggaggtcgcagaggacttgacgatgtcgaggacctaggcgaaggaggagagtcgtcgctgactgggacgctgaggaggaccaccgcctgtggcaagtatgcagggctccggcgacgagctcaaggagaggagagagagagagagagagagagagagagagagagagagtatgagggcaatactgtcaaacactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

5.83

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004881)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341
rosa_laevigata	RLG00000018218
rosa_multiflora	Rmu_sc0007341.1_g000037
rosa_roxburghii	Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600
rosa_rugosa	Rorug04G0458600 Rorug07G0190100
rosa_samantha	Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300
rosa_wichuraiana	Rw5G016900 Rw6G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	33, 169, 318
AclWI	GGATC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	2 cut(s)	116, 355
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	74
AspA2I	CCTAGG	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	265, 312
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	265, 312
AvrII	CCTAGG	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	342, 355
Bbv12I	GWGCWC	2 cut(s)	116, 355
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	75
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	265, 312
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	265, 312
BmiI	GGNNCC	2 cut(s)	28, 341
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	22, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	22, 268
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	3 cut(s)	294, 322, 377
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	116, 355
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	208, 313
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	208, 313
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	3 cut(s)	116, 342, 355
Bsp143I	GATC	2 cut(s)	87, 173
BspACI	CCGC	3 cut(s)	33, 169, 318
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	28, 341
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	22, 268
BssMI	GATC	2 cut(s)	87, 173
BssT1I	CCWWGG	2 cut(s)	22, 268
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	98, 210
BstDEI	CTNAG	2 cut(s)	305, 429
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	90, 176
BstMBI	GATC	2 cut(s)	87, 173
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	265, 312
CseI	GACGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	3 cut(s)	74, 340, 353
CviKI_1	RGCY	3 cut(s)	74, 340, 353
DdeI	CTNAG	2 cut(s)	305, 429
DpnI	GATC	2 cut(s)	89, 175
DpnII	GATC	2 cut(s)	87, 173
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	98, 210
EarI	CTCTTC	2 cut(s)	98, 210
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	22, 268
Eco24I	GRGCYC	2 cut(s)	342, 355
Eco47I	GGWCC	2 cut(s)	265, 312
Eco53kI	GAGCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	22, 268
EcoT38I	GRGCYC	2 cut(s)	342, 355
ErhI	CCWWGG	2 cut(s)	22, 268
FaeI	CATG	1 cut(s)	55
FaiI	YATR	5 cut(s)	44, 53, 65, 333, 405
FaqI	GGGAC	2 cut(s)	208, 313
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	2 cut(s)	342, 355
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	14, 284
HpaII	CCGG	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	178, 230
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	4 cut(s)	88, 202, 292, 351
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	4 cut(s)	63, 77, 130, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	305, 429
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	87, 173
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	6 cut(s)	24, 174, 282, 321, 334, 356
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	269
MalI	GATC	2 cut(s)	89, 175
MboI	GATC	2 cut(s)	87, 173
MboII	GAAGA	3 cut(s)	85, 88, 227
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	3 cut(s)	116, 342, 355
MluCI	AATT	2 cut(s)	78, 131
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	87, 173
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	28, 341
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	76
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	28, 341
PspPI	GGNCC	2 cut(s)	265, 312
PspPPI	RGGWCCY	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	87, 173
Sau96I	GGNCC	2 cut(s)	265, 312
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	3 cut(s)	116, 342, 355
SetI	ASST	5 cut(s)	24, 140, 241, 270, 355
SfaNI	GCATC	1 cut(s)	117
SinI	GGWCC	2 cut(s)	265, 312
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	78, 131
SsiI	CCGC	3 cut(s)	33, 169, 318
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	22, 268
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	140, 261
TasI	AATT	2 cut(s)	78, 131
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	265, 312
XmaJI	CCTAGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.