No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341 |
| rosa_laevigata | RLG00000018218 |
| rosa_multiflora | Rmu_sc0007341.1_g000037 |
| rosa_roxburghii | Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600 |
| rosa_rugosa | Rorug04G0458600 Rorug07G0190100 |
| rosa_samantha | Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300 |
| rosa_wichuraiana | Rw5G016900 Rw6G005030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 6 |
| AcsI | RAATTY | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 12 |
| AgsI | TTSAA | 3 cut(s) | 120, 215, 515 |
| AluBI | AGCT | 3 cut(s) | 116, 188, 437 |
| AluI | AGCT | 3 cut(s) | 116, 188, 437 |
| Alw21I | GWGCWC | 1 cut(s) | 414 |
| Alw26I | GTCTC | 5 cut(s) | 12, 282, 331, 375, 450 |
| ApeKI | GCWGC | 2 cut(s) | 38, 113 |
| ApoI | RAATTY | 1 cut(s) | 178 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AsuHPI | GGTGA | 2 cut(s) | 313, 367 |
| Bbv12I | GWGCWC | 1 cut(s) | 414 |
| BbvI | GCAGC | 2 cut(s) | 50, 125 |
| BccI | CCATC | 2 cut(s) | 133, 333 |
| BciVI | GTATCC | 1 cut(s) | 356 |
| BcoDI | GTCTC | 5 cut(s) | 12, 282, 331, 375, 450 |
| BfaI | CTAG | 2 cut(s) | 416, 538 |
| BfuI | GTATCC | 1 cut(s) | 356 |
| BisI | GCNGC | 2 cut(s) | 39, 114 |
| BlsI | GCNGC | 2 cut(s) | 40, 115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 253, 285 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaWI | WCCGGW | 1 cut(s) | 377 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 12 |
| Bse1I | ACTGG | 1 cut(s) | 340 |
| BseGI | GGATG | 2 cut(s) | 344, 349 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BseMII | CTCAG | 2 cut(s) | 236, 447 |
| BseNI | ACTGG | 1 cut(s) | 340 |
| BseRI | GAGGAG | 1 cut(s) | 300 |
| BseXI | GCAGC | 2 cut(s) | 50, 125 |
| BsgI | GTGCAG | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 414 |
| BsiSI | CCGG | 1 cut(s) | 378 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BsmAI | GTCTC | 5 cut(s) | 12, 282, 331, 375, 450 |
| Bsp1286I | GDGCHC | 1 cut(s) | 414 |
| Bsp143I | GATC | 2 cut(s) | 26, 487 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspCNI | CTCAG | 2 cut(s) | 235, 446 |
| BsrI | ACTGG | 1 cut(s) | 340 |
| BssMI | GATC | 2 cut(s) | 26, 487 |
| Bst4CI | ACNGT | 1 cut(s) | 35 |
| Bst6I | CTCTTC | 2 cut(s) | 59, 393 |
| BstDEI | CTNAG | 2 cut(s) | 222, 433 |
| BstF5I | GGATG | 2 cut(s) | 344, 349 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 2 cut(s) | 29, 490 |
| BstMAI | GTCTC | 5 cut(s) | 12, 282, 331, 375, 450 |
| BstMBI | GATC | 2 cut(s) | 26, 487 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 434 |
| BstV1I | GCAGC | 2 cut(s) | 50, 125 |
| BsuI | GTATCC | 1 cut(s) | 356 |
| BtgZI | GCGATG | 1 cut(s) | 111 |
| BtsCI | GGATG | 2 cut(s) | 344, 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 40 |
| CfoI | GCGC | 1 cut(s) | 174 |
| CviJI | RGCY | 4 cut(s) | 116, 188, 265, 437 |
| CviKI_1 | RGCY | 4 cut(s) | 116, 188, 265, 437 |
| DdeI | CTNAG | 2 cut(s) | 222, 433 |
| DpnI | GATC | 2 cut(s) | 28, 489 |
| DpnII | GATC | 2 cut(s) | 26, 487 |
| Eam1104I | CTCTTC | 2 cut(s) | 59, 393 |
| EarI | CTCTTC | 2 cut(s) | 59, 393 |
| EcoRI | GAATTC | 1 cut(s) | 178 |
| FaiI | YATR | 1 cut(s) | 296 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 114 |
| FokI | GGATG | 2 cut(s) | 351, 356 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 114 |
| FspBI | CTAG | 2 cut(s) | 416, 538 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 2 cut(s) | 39, 114 |
| HapII | CCGG | 1 cut(s) | 378 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HinfI | GANTC | 1 cut(s) | 106 |
| HpaII | CCGG | 1 cut(s) | 378 |
| HphI | GGTGA | 2 cut(s) | 313, 367 |
| Hpy166II | GTNNAC | 1 cut(s) | 156 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 487, 492, 520 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 224, 272, 449 |
| Hpy8I | GTNNAC | 1 cut(s) | 156 |
| HpyAV | CCTTC | 2 cut(s) | 388, 446 |
| HpyCH4III | ACNGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 1 cut(s) | 38 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 434 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 433 |
| HspAI | GCGC | 1 cut(s) | 172 |
| Kzo9I | GATC | 2 cut(s) | 26, 487 |
| LmnI | GCTCC | 2 cut(s) | 169, 409 |
| LpnPI | CCDG | 5 cut(s) | 123, 209, 321, 391, 508 |
| Lsp1109I | GCAGC | 2 cut(s) | 50, 125 |
| MaeI | CTAG | 2 cut(s) | 416, 538 |
| MalI | GATC | 2 cut(s) | 28, 489 |
| MboI | GATC | 2 cut(s) | 26, 487 |
| MboII | GAAGA | 6 cut(s) | 76, 102, 157, 210, 410, 479 |
| MhlI | GDGCHC | 1 cut(s) | 414 |
| MluCI | AATT | 2 cut(s) | 178, 321 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 6 cut(s) | 202, 255, 268, 278, 394, 412 |
| MspI | CCGG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 434 |
| NdeII | GATC | 2 cut(s) | 26, 487 |
| PfeI | GAWTC | 1 cut(s) | 106 |
| PkrI | GCNGC | 2 cut(s) | 40, 115 |
| SatI | GCNGC | 2 cut(s) | 39, 114 |
| Sau3AI | GATC | 2 cut(s) | 26, 487 |
| SduI | GDGCHC | 1 cut(s) | 414 |
| SetI | ASST | 9 cut(s) | 52, 118, 190, 213, 405, 417, 439, 534, 539 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| Sse9I | AATT | 2 cut(s) | 178, 321 |
| SsiI | CCGC | 1 cut(s) | 6 |
| SspMI | CTAG | 2 cut(s) | 416, 538 |
| TaaI | ACNGT | 1 cut(s) | 35 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 2 cut(s) | 178, 321 |
| TfiI | GAWTC | 1 cut(s) | 106 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseI | GCWGC | 2 cut(s) | 38, 113 |
| TspDTI | ATGAA | 1 cut(s) | 486 |
| TspRI | CASTG | 1 cut(s) | 40 |
| XapI | RAATTY | 1 cut(s) | 178 |
| XspI | CTAG | 2 cut(s) | 416, 538 |