Rh2CG254100

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004881
Physical Location & Seq
Forward (+)
26963901 .. 26964945
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG254100.1

Sequence Viewer

Length: 585 bp
ATGGCAACTGATCCAGCACACCGCCGATCGGAGATTAAGGGCAGAGGGATGACGGAGAAAGATAAAGAAGAGGAAGTAATCGGACTTGGAGGTCGCAGAGGACGTAATCGGAGGGTAGCTATTTCAAGAGGTTTAAATGGTGTTGGACTTGCCATAGTCATTCCTGCCATTCAGTCACTTGTTGCTGACTCAACAGATGATAACAACTGTGGTACAACATTTGGATGGTTACAACTAACAGGAAATCTTGGCTCCATAAATAGGTGGTCTTTTTTCTTACTAATAGCCTCCACTTCAGTAATAGGTATAGATGGTTGGAGAATTGCATTCCATCTGGTTGGGCTCATTAGTGTCATAGTCGGTATATTGGTTCGTCTCTTTGCTAATGATCCGCACTATGTACAGAACAATGGTAAAGCTAAAGATGAAATGCCACACACTTTTTCAGAAGAAGTGAAGGACCTGATTAAAGAATCCAAGTTGGTTATCAAAATCCCAACTTTTCAAATACTCATTGCTCAGGGTGTCTTTGGATCATTCCCCTTGTCAGGTTTGTCATTTGCTCCTTATCGGCTTCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

194

Amino Acids

21.23

Weight (kDa)

9.41

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 40 - 173 3e-12 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 90
AciI CCGC 2 cut(s) 22, 392
AclWI GGATC 3 cut(s) 5, 383, 541
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 214, 402
AfiI CCNNNNNNNGG 3 cut(s) 28, 261, 548
AgsI TTSAA 2 cut(s) 126, 506
AluBI AGCT 2 cut(s) 119, 419
AluI AGCT 2 cut(s) 119, 419
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 3 cut(s) 5, 383, 541
AspS9I GGNCC 1 cut(s) 460
AvaII GGWCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 345
BccI CCATC 3 cut(s) 219, 305, 339
BcoDI GTCTC 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 519
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 261, 548
Bse3DI GCAATG 1 cut(s) 513
BseGI GGATG 2 cut(s) 54, 230
BseLI CCNNNNNNNGG 3 cut(s) 28, 261, 548
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 28, 261, 548
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 4 cut(s) 10, 26, 388, 533
BspACI CCGC 2 cut(s) 22, 392
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 3 cut(s) 5, 383, 541
BsrDI GCAATG 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 400
BssMI GATC 4 cut(s) 10, 26, 388, 533
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 54, 230
BstKTI GATC 4 cut(s) 13, 29, 391, 536
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 4 cut(s) 10, 26, 388, 533
BstMCI CGRYCG 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 338
BtsCI GGATG 2 cut(s) 54, 230
Cfr13I GGNCC 1 cut(s) 460
Csp6I GTAC 2 cut(s) 213, 401
CviJI RGCY 6 cut(s) 119, 252, 287, 343, 419, 574
CviKI_1 RGCY 6 cut(s) 119, 252, 287, 343, 419, 574
CviQI GTAC 2 cut(s) 213, 401
DdeI CTNAG 1 cut(s) 519
DpnI GATC 4 cut(s) 12, 28, 390, 535
DpnII GATC 4 cut(s) 10, 26, 388, 533
DraI TTTAAA 1 cut(s) 135
DrdI GACNNNNNNGTC 1 cut(s) 90
DseDI GACNNNNNNGTC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 380
FaiI YATR 7 cut(s) 155, 257, 308, 356, 365, 399, 583
FokI GGATG 2 cut(s) 61, 237
FriOI GRGCYC 1 cut(s) 345
HinfI GANTC 2 cut(s) 188, 473
Hpy188I TCNGA 4 cut(s) 31, 83, 111, 448
Hpy188III TCNNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 103
Kzo9I GATC 4 cut(s) 10, 26, 388, 533
LmnI GCTCC 2 cut(s) 257, 568
LpnPI CCDG 7 cut(s) 27, 177, 225, 320, 476, 506, 534
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 174, 228
MalI GATC 4 cut(s) 12, 28, 390, 535
MboI GATC 4 cut(s) 10, 26, 388, 533
MboII GAAGA 2 cut(s) 80, 461
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 124, 296
MnlI CCTC 7 cut(s) 38, 64, 83, 92, 105, 122, 298
MseI TTAA 3 cut(s) 36, 134, 468
MslI CAYNNNNRTG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 326
NdeII GATC 4 cut(s) 10, 26, 388, 533
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 473
Ple19I CGATCG 1 cut(s) 29
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 460
Psp5II RGGWCCY 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 460
PspPPI RGGWCCY 1 cut(s) 460
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 2 cut(s) 214, 402
RsaNI GTAC 2 cut(s) 213, 401
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 3 cut(s) 36, 134, 468
Sau3AI GATC 4 cut(s) 10, 26, 388, 533
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 345
SetI ASST 9 cut(s) 94, 106, 121, 133, 266, 307, 421, 465, 553
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 223
Sse9I AATT 1 cut(s) 321
SsiI CCGC 2 cut(s) 22, 392
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 106
TasI AATT 1 cut(s) 321
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 3 cut(s) 36, 134, 468
Tru9I TTAA 3 cut(s) 36, 134, 468
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.