Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004881

Physical Location & Seq

Genomic Coordinates Forward (+)

34742912 .. 34753870

Gene Structure 10959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGAGGCTTCCGGCACCGAATGCAGCGCATTGCACAAACAAATCGCAGTGTCTACAACTGAGATACAGAAATCATCGCAGTATTCTGCAGAGTCTCAAGCAACAGCATTTGACACAGTTTCAGATAACTACAACTTCAATACACTTCATGCAAGTGGCTTTCTATGGACTATCAGTATTGGAACAAAGCAGTGGAGATACTATGATTTTGGTCCAAAAGGAGTAGCTGCAGTTATTTGTCTTCTTGCAACAGCAGGGATGGCGGATATATGTTACAAGAAGATCATGACATTGTCCATGAAGTGGAAGGCCCCCCCCCCCCCACACATATACAAGCCCGTTCGAGGCGGACGTCCATGCTTTCTCCGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

8.69

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004881)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341
rosa_laevigata	RLG00000018218
rosa_multiflora	Rmu_sc0007341.1_g000037
rosa_roxburghii	Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600
rosa_rugosa	Rorug04G0458600 Rorug07G0190100
rosa_samantha	Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300
rosa_wichuraiana	Rw5G016900 Rw6G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	266, 351, 370
AcyI	GRCGYC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	306, 347
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	27, 230
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	215, 313
AvaII	GGWCC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	39, 217
BccI	CCATC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	90, 231
BisI	GCNGC	2 cut(s)	28, 231
BlsI	GCNGC	2 cut(s)	29, 232
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	215, 313
BmiI	GGNNCC	2 cut(s)	19, 315
BpiI	GAAGAC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 347
Bse3DI	GCAATG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	306, 347
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	39, 217
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	306, 347
BsmAI	GTCTC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	3 cut(s)	266, 351, 370
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	19, 315
BspMAI	CTGCAG	2 cut(s)	94, 235
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	32
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 263, 369
BstSFI	CTRYAG	2 cut(s)	90, 231
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	39, 217
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	2 cut(s)	57, 200
BtsIMutI	CAGTG	2 cut(s)	57, 200
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	215, 313
CviAII	CATG	4 cut(s)	152, 289, 301, 360
CviJI	RGCY	5 cut(s)	11, 162, 230, 314, 340
CviKI_1	RGCY	5 cut(s)	11, 162, 230, 314, 340
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EciI	GGCGGA	2 cut(s)	281, 366
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	313
FaeI	CATG	4 cut(s)	155, 292, 304, 363
FatI	CATG	4 cut(s)	151, 288, 300, 359
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	28, 231
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	28, 231
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	28, 231
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	155, 292, 304, 363
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	27, 37, 92, 155, 233, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 263, 369
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	155, 292, 304, 363
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	285
LpnPI	CCDG	2 cut(s)	28, 243
Lsp1109I	GCAGC	2 cut(s)	39, 217
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	236, 295
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	29
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	24, 263, 369
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	4 cut(s)	155, 292, 304, 363
NlaIV	GGNNCC	2 cut(s)	19, 315
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PctI	GAATGC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	29, 232
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	19, 315
PspPI	GGNCC	2 cut(s)	215, 313
PstI	CTGCAG	2 cut(s)	94, 235
PsyI	GACNNNGTC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	156
SatI	GCNGC	2 cut(s)	28, 231
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	215, 313
SchI	GAGTC	1 cut(s)	104
SetI	ASST	2 cut(s)	232, 358
SfcI	CTRYAG	2 cut(s)	90, 231
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SsiI	CCGC	3 cut(s)	266, 351, 370
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	346
TscAI	CASTG	2 cut(s)	57, 200
TseI	GCWGC	2 cut(s)	27, 230
TspDTI	ATGAA	2 cut(s)	140, 317
TspRI	CASTG	2 cut(s)	57, 200
Tth111I	GACNNNGTC	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.