Rh4CG093300

Maspardin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004881
Physical Location & Seq
Forward (+)
16927243 .. 16927923
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG093300.1

Sequence Viewer

Length: 210 bp
ATGAAAGGCGTCTACTCGGCGCCCAGGGATTACATCTACTTCAAGTCCCAGGTCCCTCTTCACAAGATCCCAATTGGCACAAAGCAGTGGCGATACTATGATTTTGGTCCGAAACCAGACCGAAAGCTTCTTCCTCCACCATCTCAACAGGCAGCTTCTTCTCCCCTTCGCTCCACAGCTCCTCCCCTCAGCTTCTCCACGGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

9.93

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 12
AclWI GGATC 1 cut(s) 61
AcyI GRCGYC 2 cut(s) 9, 20
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 2 cut(s) 23, 48
AluBI AGCT 4 cut(s) 127, 155, 179, 192
AluI AGCT 4 cut(s) 127, 155, 179, 192
AlwI GGATC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 52, 107
AvaII GGWCC 2 cut(s) 52, 107
BanI GGYRCC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 25, 50
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 25, 50
Bme18I GGWCC 2 cut(s) 52, 107
BmgT120I GGNCC 2 cut(s) 52, 107
BmiI GGNNCC 2 cut(s) 21, 54
BmrFI CCNGG 2 cut(s) 25, 50
Bpu10I CCTNAGC 1 cut(s) 188
BsaHI GRCGYC 2 cut(s) 9, 20
BsaJI CCNNGG 4 cut(s) 23, 24, 48, 198
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
BseBI CCWGG 2 cut(s) 25, 50
BseDI CCNNGG 4 cut(s) 23, 24, 48, 198
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 19
BslFI GGGAC 2 cut(s) 31, 38
BsmFI GGGAC 2 cut(s) 31, 38
Bsp143I GATC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 21, 54
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 19
BssECI CCNNGG 4 cut(s) 23, 24, 48, 198
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 2 cut(s) 9, 20
Bst2UI CCWGG 2 cut(s) 25, 50
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 9, 20
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstNI CCWGG 2 cut(s) 25, 50
BstSCI CCNGG 2 cut(s) 23, 48
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 52, 107
CviJI RGCY 5 cut(s) 127, 155, 179, 192, 203
CviKI_1 RGCY 5 cut(s) 127, 155, 179, 192, 203
DdeI CTNAG 1 cut(s) 188
DinI GGCGCC 1 cut(s) 21
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 52, 107
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 23, 48
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
FaiI YATR 1 cut(s) 99
FaqI GGGAC 2 cut(s) 31, 38
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 23
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 2 cut(s) 9, 20
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 188
Hsp92I GRCGYC 2 cut(s) 9, 20
HspAI GCGC 1 cut(s) 20
KasI GGCGCC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 176, 184
LpnPI CCDG 6 cut(s) 10, 35, 37, 62, 129, 134
Lsp1109I GCAGC 1 cut(s) 164
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 3 cut(s) 50, 122, 150
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 66
MluCI AATT 1 cut(s) 72
Mly113I GGCGCC 1 cut(s) 20
MnlI CCTC 4 cut(s) 66, 144, 192, 197
MspR9I CCNGG 2 cut(s) 25, 50
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 2 cut(s) 25, 50
NarI GGCGCC 1 cut(s) 20
NdeII GATC 1 cut(s) 66
NlaIV GGNNCC 2 cut(s) 21, 54
PasI CCCWGGG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 23, 48
PspGI CCWGG 2 cut(s) 23, 48
PspN4I GGNNCC 2 cut(s) 21, 54
PspPI GGNCC 2 cut(s) 52, 107
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 66
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 52, 107
ScrFI CCNGG 2 cut(s) 25, 50
SetI ASST 5 cut(s) 54, 129, 157, 181, 194
SfoI GGCGCC 1 cut(s) 21
SgeI CNNG 9 cut(s) 28, 36, 37, 55, 61, 62, 76, 128, 161
SinI GGWCC 2 cut(s) 52, 107
Sse9I AATT 1 cut(s) 72
SspDI GGCGCC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 23, 48
TaqII GACCGA 1 cut(s) 135
TasI AATT 1 cut(s) 72
TscAI CASTG 1 cut(s) 92
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 52, 107
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.