Rh1DG149700

Maspardin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004881
Physical Location & Seq
Forward (+)
31407418 .. 31416698
9281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG149700.1

Sequence Viewer

Length: 276 bp
ATGAAAGGCGTCTACTCGGTGCCCGGAGATTACATCTACTTCAAGTCCCAGGTCCCTCTTCACAAGATCCCAATTGGCACAAAGCAGTGGCGATACTATGATTTTGTCGCCTGGAAACTCCAAGTGGAACCGCACCTAGACAATTTGTACACGAGTGGTCGACGGGTGCCCGCCATGGTTGTTGACTTAGAAAGAAGAAGGAATCAGCCATGGGTATTCAGTTCTACTGCGTGGGGAGAAAGTCTTCGCTTCAGGTTCGCAAGACACAGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

91

Amino Acids

10.96

Weight (kDa)

10.22

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 166
AccI GTMKAC 2 cut(s) 12, 160
AciI CCGC 2 cut(s) 131, 171
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 2 cut(s) 48, 110
AlwI GGATC 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 24, 171
BanI GGYRCC 2 cut(s) 19, 166
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 50, 112
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 1 cut(s) 137
Bme1390I CCNGG 3 cut(s) 24, 50, 112
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 4 cut(s) 21, 54, 129, 168
BmrFI CCNGG 3 cut(s) 24, 50, 112
BpiI GAAGAC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 48, 174, 209
BseBI CCWGG 2 cut(s) 50, 112
BseDI CCNNGG 3 cut(s) 48, 174, 209
BseSI GKGCMC 2 cut(s) 24, 171
BshNI GGYRCC 2 cut(s) 19, 166
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 2 cut(s) 31, 38
BsmFI GGGAC 2 cut(s) 31, 38
Bsp1286I GDGCHC 2 cut(s) 24, 171
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 2 cut(s) 174, 209
BspACI CCGC 2 cut(s) 131, 171
BspLI GGNNCC 4 cut(s) 21, 54, 129, 168
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 2 cut(s) 19, 166
BsrGI TGTACA 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 48, 174, 209
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 174, 209
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 50, 112
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 2 cut(s) 174, 209
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstNI CCWGG 2 cut(s) 50, 112
BstSCI CCNGG 3 cut(s) 22, 48, 110
BstSLI GKGCMC 2 cut(s) 24, 171
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 2 cut(s) 174, 209
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 175, 210
CviJI RGCY 1 cut(s) 208
CviKI_1 RGCY 1 cut(s) 208
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 174, 209
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 48, 110
EcoT14I CCWWGG 2 cut(s) 174, 209
ErhI CCWWGG 2 cut(s) 174, 209
FaeI CATG 2 cut(s) 178, 213
FaiI YATR 3 cut(s) 99, 176, 211
FaqI GGGAC 2 cut(s) 31, 38
FatI CATG 2 cut(s) 174, 209
FauI CCCGC 1 cut(s) 178
FblI GTMKAC 2 cut(s) 12, 160
FspBI CTAG 1 cut(s) 137
HapII CCGG 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 178, 213
HincII GTYRAC 2 cut(s) 161, 184
HindII GTYRAC 2 cut(s) 161, 184
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 4 cut(s) 13, 150, 161, 184
Hpy8I GTNNAC 4 cut(s) 13, 150, 161, 184
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 187
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 178, 213
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 6 cut(s) 35, 37, 62, 97, 124, 238
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 3 cut(s) 50, 207, 236
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 24, 171
MluCI AATT 2 cut(s) 72, 142
MnlI CCTC 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 243
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 24, 50, 112
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 2 cut(s) 50, 112
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 2 cut(s) 174, 209
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 178, 213
NlaIV GGNNCC 4 cut(s) 21, 54, 129, 168
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 48, 110
PspGI CCWGG 2 cut(s) 48, 110
PspN4I GGNNCC 4 cut(s) 21, 54, 129, 168
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SalI GTCGAC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 3 cut(s) 24, 50, 112
SduI GDGCHC 2 cut(s) 24, 171
SetI ASST 3 cut(s) 54, 138, 257
SinI GGWCC 1 cut(s) 52
Sse9I AATT 2 cut(s) 72, 142
SsiI CCGC 2 cut(s) 131, 171
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 22, 48, 110
StyI CCWWGG 2 cut(s) 174, 209
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 72, 142
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 52
XmiI GTMKAC 2 cut(s) 12, 160
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.