Rw5G016900

RHOMBOID-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004881
Physical Location & Seq
Reverse (-)
21631756 .. 21634126
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G016900.1

Sequence Viewer

Length: 342 bp
ATGGTGGGTCTGTATCTTTTTGGGATGAATATTGGAAGAGTTTTTGGGCCTGGATTTTTGCTCAAGTTGTATCTAGCTGGAGCTATTGGTGGTTCAGTCTTTTACTTGGTGCACCATGCCTGGATGTGCTCACTGCCAGAGGCATTCATCACCAGTTTGATTCTATTAAGCATCATAGACATTTCTTCCCCTGGATTGCATCAACAGTTAATGGAGCACCTGGATGGAAACAAGCACACTCAGCTTTACAATGTCAAGAAGGATACTGTAATCGGTTTTCCAGGTCTCATGCTTTGTGCAGGTGAAAGTTTTTGCTGTGATTTTGGTTTTTTAACGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

113

Amino Acids

12.42

Weight (kDa)

6.14

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 290
AclI AACGTT 1 cut(s) 335
AjnI CCWGG 5 cut(s) 49, 119, 190, 219, 280
AluBI AGCT 3 cut(s) 77, 83, 244
AluI AGCT 3 cut(s) 77, 83, 244
Alw21I GWGCWC 3 cut(s) 114, 131, 219
Alw26I GTCTC 1 cut(s) 290
Alw44I GTGCAC 1 cut(s) 110
AoxI GGCC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 142, 314
BaeGI GKGCMC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 114, 131, 219
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 5 cut(s) 51, 121, 192, 221, 282
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 290
BfuI GTATCC 1 cut(s) 256
Bme1390I CCNGG 5 cut(s) 51, 121, 192, 221, 282
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 5 cut(s) 51, 121, 192, 221, 282
BmsI GCATC 2 cut(s) 180, 208
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 153
BseBI CCWGG 5 cut(s) 51, 121, 192, 221, 282
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 3 cut(s) 30, 129, 229
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 3 cut(s) 114, 131, 219
BsmAI GTCTC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 3 cut(s) 114, 131, 219
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 190
Bst2UI CCWGG 5 cut(s) 51, 121, 192, 221, 282
Bst4CI ACNGT 2 cut(s) 207, 268
Bst6I CTCTTC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 30, 129, 229
BstMAI GTCTC 1 cut(s) 290
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 5 cut(s) 51, 121, 192, 221, 282
BstSCI CCNGG 5 cut(s) 49, 119, 190, 219, 280
BstSLI GKGCMC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 30, 129, 229
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 2 cut(s) 116, 289
CviJI RGCY 4 cut(s) 49, 77, 83, 244
CviKI_1 RGCY 4 cut(s) 49, 77, 83, 244
DdeI CTNAG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 290
EcoRII CCWGG 5 cut(s) 49, 119, 190, 219, 280
FaeI CATG 2 cut(s) 119, 292
FaiI YATR 3 cut(s) 117, 176, 290
FatI CATG 2 cut(s) 115, 288
FokI GGATG 3 cut(s) 37, 136, 236
FspBI CTAG 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 2 cut(s) 119, 292
HinfI GANTC 1 cut(s) 160
HphI GGTGA 2 cut(s) 142, 314
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 207, 268
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 112, 199, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 2 cut(s) 119, 292
LmnI GCTCC 2 cut(s) 80, 214
LweI GCATC 2 cut(s) 180, 208
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 335
MboII GAAGA 2 cut(s) 48, 177
MhlI GDGCHC 3 cut(s) 114, 131, 219
MnlI CCTC 1 cut(s) 133
MseI TTAA 4 cut(s) 167, 209, 332, 340
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 5 cut(s) 51, 121, 192, 221, 282
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 5 cut(s) 51, 121, 192, 221, 282
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 119, 292
PaqCI CACCTGC 1 cut(s) 290
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 335
Psp6I CCWGG 5 cut(s) 49, 119, 190, 219, 280
PspGI CCWGG 5 cut(s) 49, 119, 190, 219, 280
PspPI GGNCC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 4 cut(s) 167, 209, 332, 340
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 5 cut(s) 51, 121, 192, 221, 282
SduI GDGCHC 3 cut(s) 114, 131, 219
SetI ASST 7 cut(s) 79, 85, 222, 246, 286, 304, 338
SfaNI GCATC 2 cut(s) 180, 208
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 5 cut(s) 49, 119, 190, 219, 280
TaaI ACNGT 2 cut(s) 207, 268
TaiI ACGT 1 cut(s) 338
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 4 cut(s) 167, 209, 332, 340
Tru9I TTAA 4 cut(s) 167, 209, 332, 340
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 41, 136
TspRI CASTG 1 cut(s) 138
VneI GTGCAC 1 cut(s) 110
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.