Rh2BG246300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004881
Physical Location & Seq
Forward (+)
25081990 .. 25082265
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG246300.1

Sequence Viewer

Length: 276 bp
ATGACACCGGCTCTAGGTGAGGAATATCGATTCGCCGCCCCACTGAATCGACTTGCTGCGGAATCGGTGGTACCCAAGGAACTAGGAGTCCGGAGAAACGAACGGGTCGAAATGGTGGAAATCCGGGTTCAGCGTCGAGGTGACCGGATGGAACGTCTTCATGTCGACGTCGAAGACCTCCACGTGTCGGAACTTCGTGTTGCGGCGGCGAGTGGCGACGATTATTCTTTGTCAGTCGTGCATGGCGGCCGGAGTGAAGCAGTGGAGATCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.23

Weight (kDa)

5.35

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 5 cut(s) 36, 59, 203, 206, 246
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 247
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 14, 187
AflIII ACRYGT 1 cut(s) 183
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AlwI GGATC 1 cut(s) 262
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 29, 152
BanI GGYRCC 1 cut(s) 70
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 149, 180
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 142
BcnI CCSGG 1 cut(s) 125
BfaI CTAG 2 cut(s) 14, 83
BisI GCNGC 5 cut(s) 36, 57, 204, 207, 247
BlsI GCNGC 5 cut(s) 37, 58, 205, 208, 248
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 149, 180
BpuMI CCSGG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 90, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 187
Bse118I RCCGGY 1 cut(s) 7
BseAI TCCGGA 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 14, 187
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 5 cut(s) 8, 91, 124, 145, 250
BslI CCNNNNNNNGG 2 cut(s) 14, 187
BsnI GGCC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 5 cut(s) 36, 59, 203, 206, 246
BspANI GGCC 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 28
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 7
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 184
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMCI CGRYCG 1 cut(s) 250
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 149, 180
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BstZI CGGCCG 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 28
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 1 cut(s) 28
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 41, 267
Cfr10I RCCGGY 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 28
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 161, 242
CviJI RGCY 2 cut(s) 11, 249
CviKI_1 RGCY 2 cut(s) 11, 249
CviQI GTAC 1 cut(s) 71
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 75
Eco52I CGGCCG 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 164, 245
FaiI YATR 2 cut(s) 162, 243
FatI CATG 2 cut(s) 160, 241
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 5 cut(s) 36, 57, 204, 207, 247
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 5 cut(s) 36, 57, 204, 207, 247
FspBI CTAG 2 cut(s) 14, 83
GluI GCNGC 5 cut(s) 36, 57, 204, 207, 247
HaeIII GGCC 1 cut(s) 249
HapII CCGG 5 cut(s) 8, 91, 124, 145, 250
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 164, 245
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 4 cut(s) 30, 46, 62, 87
HpaII CCGG 5 cut(s) 8, 91, 124, 145, 250
HphI GGTGA 2 cut(s) 29, 152
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 4 cut(s) 138, 170, 173, 221
HpyCH4IV ACGT 3 cut(s) 154, 168, 183
HpyCH4V TGCA 1 cut(s) 241
HpySE526I ACGT 3 cut(s) 154, 168, 183
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 164, 245
Kpn2I TCCGGA 1 cut(s) 90
KpnI GGTACC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 5 cut(s) 21, 104, 137, 158, 263
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 2 cut(s) 14, 83
MaeII ACGT 3 cut(s) 154, 168, 183
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 149, 185
MflI RGATCY 1 cut(s) 267
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 3 cut(s) 13, 131, 188
MroI TCCGGA 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 156
MspI CCGG 5 cut(s) 8, 91, 124, 145, 250
MspR9I CCNGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 164, 245
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 30, 46, 62
PkrI GCNGC 5 cut(s) 37, 58, 205, 208, 248
PleI GAGTC 1 cut(s) 95
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 184
PspCI CACGTG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 5 cut(s) 36, 57, 204, 207, 247
Sau3AI GATC 1 cut(s) 267
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 125
SetI ASST 6 cut(s) 19, 142, 157, 171, 180, 186
SsiI CCGC 5 cut(s) 36, 59, 203, 206, 246
SspMI CTAG 2 cut(s) 14, 83
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 3 cut(s) 157, 171, 186
TaqI TCGA 6 cut(s) 28, 49, 108, 136, 165, 171
TauI GCSGC 4 cut(s) 38, 206, 209, 249
TfiI GAWTC 3 cut(s) 30, 46, 62
TscAI CASTG 2 cut(s) 48, 267
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 2 cut(s) 48, 267
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 14, 83
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.