Rh4AG097400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004881
Physical Location & Seq
Reverse (-)
20771561 .. 20777538
5978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG097400.1

Sequence Viewer

Length: 411 bp
ATGATCGATTCTTTGGGTTATGGTCTTGCAGGTGGGTTTTGGCCGGTGTTTCTAGTCGGTGATTGGCTACAGAGAGGAGGCGTCGACGATCTTATGTGTGGCTGGATGGGTTGGCCAGTGGCTGCTATGGCATGGCAGAGGACAATTAGGGCTTATGGCCAATTTGCTTGGGTTTGGGCCTGGGCTGCTCGGCTCTGTTTCCTGGGCCTTCAAGGAGGGTCTGAAAAAAATGAGAAGCTTGAATCTGTCAATCAAGATTGGAAGAATTTTTGGGTGGAGCTATCGGTGATTTTTGCTCAAGTTGTATCTAGCTGGAGCTATCGGTGGTTCAGTCTTTTACTTGGAGCACCATACCTGGATGTACTTACCGCCAGAGGGAAAGATCTAAGGCATGCATCACCAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

7.78

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 369
AcoI YGGCCR 3 cut(s) 41, 113, 157
AcsI RAATTY 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 2 cut(s) 212, 242
AjnI CCWGG 3 cut(s) 179, 201, 354
AluBI AGCT 4 cut(s) 238, 280, 312, 318
AluI AGCT 4 cut(s) 238, 280, 312, 318
Alw21I GWGCWC 1 cut(s) 349
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 5 cut(s) 41, 113, 157, 177, 205
ApeKI GCWGC 2 cut(s) 122, 185
ApoI RAATTY 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 177, 205
AsuHPI GGTGA 3 cut(s) 71, 298, 390
BalI TGGCCA 2 cut(s) 115, 159
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 109, 172
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 3 cut(s) 181, 203, 356
BfaI CTAG 2 cut(s) 53, 309
BfmI CTRYAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 20
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 123, 186
BlsI GCNGC 2 cut(s) 124, 187
Bme1390I CCNGG 3 cut(s) 181, 203, 356
BmgT120I GGNCC 2 cut(s) 177, 205
BmrFI CCNGG 3 cut(s) 181, 203, 356
BmsI GCATC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 6
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 180, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 116, 401
BseBI CCWGG 3 cut(s) 181, 203, 356
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 180, 202
BseGI GGATG 2 cut(s) 111, 364
BseLI CCNNNNNNNGG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 116, 401
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 109, 172
BshFI GGCC 5 cut(s) 43, 115, 159, 179, 207
BshVI ATCGAT 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 375
BsnI GGCC 5 cut(s) 43, 115, 159, 179, 207
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 3, 88, 382
BspACI CCGC 1 cut(s) 369
BspANI GGCC 5 cut(s) 43, 115, 159, 179, 207
BspDI ATCGAT 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 116, 401
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 180, 202
BssMI GATC 3 cut(s) 3, 88, 382
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 3 cut(s) 181, 203, 356
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 111, 364
BstKTI GATC 3 cut(s) 6, 91, 385
BstMBI GATC 3 cut(s) 3, 88, 382
BstMWI GCNNNNNNNGC 2 cut(s) 128, 185
BstNI CCWGG 3 cut(s) 181, 203, 356
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 179, 201, 354
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 109, 172
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 5 cut(s) 43, 115, 159, 179, 207
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 2 cut(s) 111, 364
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 177, 205
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 362
CviAII CATG 2 cut(s) 132, 392
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 386
DpnI GATC 3 cut(s) 5, 90, 384
DpnII GATC 3 cut(s) 3, 88, 382
EaeI YGGCCR 3 cut(s) 41, 113, 157
EcoRII CCWGG 3 cut(s) 179, 201, 354
EcoT22I ATGCAT 1 cut(s) 397
FaeI CATG 2 cut(s) 135, 395
FaiI YATR 7 cut(s) 21, 95, 128, 133, 156, 352, 393
FatI CATG 2 cut(s) 131, 391
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 123, 186
FokI GGATG 2 cut(s) 118, 371
Fsp4HI GCNGC 2 cut(s) 123, 186
FspBI CTAG 2 cut(s) 53, 309
GluI GCNGC 2 cut(s) 123, 186
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 5 cut(s) 43, 115, 159, 179, 207
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 135, 395
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 8, 242
HpaII CCGG 1 cut(s) 44
HphI GGTGA 3 cut(s) 71, 298, 390
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 2 cut(s) 86, 89
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 29, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 185
HpyF3I CTNAG 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 135, 395
Kzo9I GATC 3 cut(s) 3, 88, 382
LmnI GCTCC 3 cut(s) 277, 315, 344
Lsp1109I GCAGC 2 cut(s) 109, 172
LweI GCATC 1 cut(s) 404
MaeI CTAG 2 cut(s) 53, 309
MalI GATC 3 cut(s) 5, 90, 384
MboI GATC 3 cut(s) 3, 88, 382
MboII GAAGA 1 cut(s) 274
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 2 cut(s) 115, 159
MluCI AATT 3 cut(s) 144, 161, 265
MluNI TGGCCA 2 cut(s) 115, 159
MnlI CCTC 5 cut(s) 68, 71, 132, 209, 368
Mox20I TGGCCA 2 cut(s) 115, 159
Mph1103I ATGCAT 1 cut(s) 397
MscI TGGCCA 2 cut(s) 115, 159
Msp20I TGGCCA 2 cut(s) 115, 159
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 181, 203, 356
MvaI CCWGG 3 cut(s) 181, 203, 356
MwoI GCNNNNNNNGC 2 cut(s) 128, 185
NdeII GATC 3 cut(s) 3, 88, 382
NlaIII CATG 2 cut(s) 135, 395
NmeAIII GCCGAG 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 395
PaeI GCATGC 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 8, 242
PkrI GCNGC 2 cut(s) 124, 187
Psp6I CCWGG 3 cut(s) 179, 201, 354
PspGI CCWGG 3 cut(s) 179, 201, 354
PspPI GGNCC 2 cut(s) 177, 205
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 2 cut(s) 123, 186
Sau3AI GATC 3 cut(s) 3, 88, 382
Sau96I GGNCC 2 cut(s) 177, 205
ScrFI CCNGG 3 cut(s) 181, 203, 356
SduI GDGCHC 1 cut(s) 349
SetI ASST 6 cut(s) 34, 240, 282, 314, 320, 357
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SphI GCATGC 1 cut(s) 395
Sse9I AATT 3 cut(s) 144, 161, 265
SsiI CCGC 1 cut(s) 369
SspMI CTAG 2 cut(s) 53, 309
StyD4I CCNGG 3 cut(s) 179, 201, 354
TaqI TCGA 3 cut(s) 6, 84, 406
TasI AATT 3 cut(s) 144, 161, 265
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 2 cut(s) 8, 242
TscAI CASTG 1 cut(s) 123
TseI GCWGC 2 cut(s) 122, 185
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 53, 309
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.