Rh4AG414200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004881
Physical Location & Seq
Forward (+)
71280796 .. 71284402
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG414200.1

Sequence Viewer

Length: 672 bp
ATGTACAACTGCGTGAGACAGTTGGACTGTGCATGTGAGAGGCCGACCTCGGTCGATTTACGCAGAGAGGAAGAGAGTTTTAGAAAGATCGCTAATCTGTATGACGTAGCACAGATTGACAGATTTTGGTTGTCGTTTGCTGACGAGTCTGAAGTAATTCCCTCTGATGTTCTTAATTTGCTGAAAAGAAAAAGTAGGATTGTTCGAGGTTCAATCTTCTCAGGAGTATTTGGTTGGAAACAAACAAAGAAAGGAAGTAGGATCAATATTCGGGAACCTCTCCTTCTGGAAAAACAGGTCCAATGCTGGCTGGAATTTAAGGTCCACCTGACCCGATCCCAGCATCAAGTAGATCTTGGTACCAGCAATTCTTTAGCTTTCATGGCAAAGTTGATCTCTTTTTCTTTTGTGTACAAGATTGCTTTCATATTGTACTTGAATGCTAAAAACAACAGCCAAAAATTGATGGATCATCTGCTATTGGGTTGTCTCCTTGGAAAAGGGCATTGTGTGCTTCTTAGACAAGCAGAACTAAAAATTACATTGGTGGATCTGCATGCGAATGAGGTGAGGCTTACTCTTGAGGAAAGGAGAGGAGACAATTTGTGGGTTCCGCCGATACACAGCAAAAGAGGAGACGAGAGGAGGGACAAGGGGATGGGAAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.82

Weight (kDa)

9.46

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AciI CCGC 1 cut(s) 614
AclWI GGATC 4 cut(s) 269, 330, 477, 558
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 4 cut(s) 5, 361, 413, 434
AgsI TTSAA 2 cut(s) 213, 439
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw26I GTCTC 4 cut(s) 10, 494, 591, 630
AlwI GGATC 4 cut(s) 269, 330, 477, 558
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 298, 322
AsuHPI GGTGA 1 cut(s) 580
AvaII GGWCC 2 cut(s) 298, 322
BanI GGYRCC 1 cut(s) 359
BccI CCATC 2 cut(s) 460, 652
BcoDI GTCTC 4 cut(s) 10, 494, 591, 630
BglII AGATCT 1 cut(s) 352
Bme18I GGWCC 2 cut(s) 298, 322
BmgT120I GGNCC 2 cut(s) 298, 322
BmiI GGNNCC 3 cut(s) 276, 361, 612
BmsI GCATC 1 cut(s) 352
BoxI GACNNNNGTC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 48, 493
BseDI CCNNGG 2 cut(s) 48, 493
BseGI GGATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 3 cut(s) 609, 648, 658
BseYI CCCAGC 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 662
BsmAI GTCTC 4 cut(s) 10, 494, 591, 630
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 43
Bsp1407I TGTACA 2 cut(s) 3, 411
Bsp143I GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
BspACI CCGC 1 cut(s) 614
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 276, 361, 612
BspPI GGATC 4 cut(s) 269, 330, 477, 558
BspQI GCTCTTC 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 359
BsrGI TGTACA 2 cut(s) 3, 411
BssECI CCNNGG 2 cut(s) 48, 493
BssMI GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
BssT1I CCWWGG 1 cut(s) 493
Bst4CI ACNGT 2 cut(s) 21, 29
Bst6I CTCTTC 2 cut(s) 66, 658
BstAPI GCANNNNNTGC 1 cut(s) 511
BstAUI TGTACA 2 cut(s) 3, 411
BstC8I GCNNGC 2 cut(s) 308, 558
BstDEI CTNAG 2 cut(s) 220, 518
BstF5I GGATG 1 cut(s) 663
BstKTI GATC 7 cut(s) 90, 264, 338, 355, 396, 472, 553
BstMAI GTCTC 4 cut(s) 10, 494, 591, 630
BstMBI GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 383, 511
BstNSI RCATGY 2 cut(s) 36, 560
BstPAI GACNNNNGTC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 352, 550
BstYI RGATCY 2 cut(s) 352, 550
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 308, 558
Cfr13I GGNCC 2 cut(s) 298, 322
Csp6I GTAC 4 cut(s) 4, 360, 412, 433
CviAII CATG 4 cut(s) 33, 382, 557, 669
CviJI RGCY 5 cut(s) 43, 310, 377, 456, 574
CviKI_1 RGCY 5 cut(s) 43, 310, 377, 456, 574
CviQI GTAC 4 cut(s) 4, 360, 412, 433
DdeI CTNAG 2 cut(s) 220, 518
DpnI GATC 7 cut(s) 89, 263, 337, 354, 395, 471, 552
DpnII GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
Eam1104I CTCTTC 2 cut(s) 66, 658
EarI CTCTTC 2 cut(s) 66, 658
EciI GGCGGA 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 298, 322
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 4 cut(s) 36, 385, 560, 672
FaiI YATR 6 cut(s) 34, 102, 383, 428, 558, 670
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 32, 381, 556, 668
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 4 cut(s) 36, 385, 560, 672
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 2 cut(s) 325, 412
Hpy188I TCNGA 2 cut(s) 151, 166
Hpy188III TCNNGA 4 cut(s) 222, 272, 287, 581
Hpy8I GTNNAC 2 cut(s) 325, 412
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 21, 29
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 32, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 511
HpyF3I CTNAG 2 cut(s) 220, 518
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 4 cut(s) 36, 385, 560, 672
KpnI GGTACC 1 cut(s) 363
Kzo9I GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
LguI GCTCTTC 1 cut(s) 658
LpnPI CCDG 8 cut(s) 207, 272, 281, 292, 296, 341, 353, 376
LweI GCATC 1 cut(s) 352
MaeII ACGT 1 cut(s) 105
MalI GATC 7 cut(s) 89, 263, 337, 354, 395, 471, 552
MboI GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
MboII GAAGA 2 cut(s) 83, 208
MflI RGATCY 2 cut(s) 352, 550
MluCI AATT 7 cut(s) 156, 175, 314, 367, 461, 537, 601
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 174, 318
MslI CAYNNNNRTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 445
MwoI GCNNNNNNNGC 2 cut(s) 383, 511
NdeII GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
NlaIII CATG 4 cut(s) 36, 385, 560, 672
NlaIV GGNNCC 3 cut(s) 276, 361, 612
NspI RCATGY 2 cut(s) 36, 560
PaeI GCATGC 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 658
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 156
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PshAI GACNNNNGTC 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 276, 361, 612
PspPI GGNCC 2 cut(s) 298, 322
PsuI RGATCY 2 cut(s) 352, 550
RsaI GTAC 4 cut(s) 5, 361, 413, 434
RsaNI GTAC 4 cut(s) 4, 360, 412, 433
RseI CAYNNNNRTG 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 174, 318
Sau3AI GATC 7 cut(s) 87, 261, 335, 352, 393, 469, 550
Sau96I GGNCC 2 cut(s) 298, 322
SchI GAGTC 1 cut(s) 155
SetI ASST 9 cut(s) 50, 108, 211, 280, 300, 324, 330, 379, 570
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 2 cut(s) 298, 322
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SphI GCATGC 1 cut(s) 560
Sse9I AATT 7 cut(s) 156, 175, 314, 367, 461, 537, 601
SsiI CCGC 1 cut(s) 614
SspI AATATT 1 cut(s) 268
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 21, 29
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 54, 205
TaqII GACCGA 1 cut(s) 40
TasI AATT 7 cut(s) 156, 175, 314, 367, 461, 537, 601
TatI WGTACW 3 cut(s) 3, 411, 432
Tru1I TTAA 2 cut(s) 174, 318
Tru9I TTAA 2 cut(s) 174, 318
TspDTI ATGAA 2 cut(s) 370, 415
VpaK11BI GGWCC 2 cut(s) 298, 322
XapI RAATTY 1 cut(s) 314
XceI RCATGY 2 cut(s) 36, 560
XmnI GAANNNNTTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.