Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004881

Physical Location & Seq

Genomic Coordinates Reverse (-)

50924375 .. 50931750

Gene Structure 7376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAATTGAGAGCTCAGCAAGATAGTAAGGTTTCTGAAGTAATTCCCTCTGATGTTCTTAATTTGCTGAAAAGAAAAAGTAGGATTGTTCGAGGTTCAATCTTCTCAGGAGTATTTGGTTGGGAACAAACAAGGAAAGGAAGAGAGCGTCGATGCGCGGTGAAGCCTATTCTCGCCATTGAGAACTACTTGAGCTCCAAGTCTTCCACACAAGCTAAGCGGCTCAAGGGTGACGTCAAGAACAATCAATCTCTTGTTCTAAGCATGGATAACCATGAAGAAGTTGCTGATGAGTTTAAAGAGTCCAAGTACGGTGGGCATCTCAAGCTTGAATCACACACTCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

116

Amino Acids

13.17

Weight (kDa)

9.83

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	59 - 103	5.1e-10	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004881)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341
rosa_laevigata	RLG00000018218
rosa_multiflora	Rmu_sc0007341.1_g000037
rosa_roxburghii	Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600
rosa_rugosa	Rorug04G0458600 Rorug07G0190100
rosa_samantha	Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300
rosa_wichuraiana	Rw5G016900 Rw6G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	158, 220
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	99, 332
AluBI	AGCT	4 cut(s)	14, 195, 215, 328
AluI	AGCT	4 cut(s)	14, 195, 215, 328
Alw21I	GWGCWC	2 cut(s)	16, 197
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	172, 242
BanII	GRGCYC	2 cut(s)	16, 197
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	16, 197
BisI	GCNGC	1 cut(s)	221
BlpI	GCTNAGC	2 cut(s)	15, 216
BlsI	GCNGC	1 cut(s)	222
BmsI	GCATC	2 cut(s)	143, 328
BpiI	GAAGAC	1 cut(s)	195
Bpu1102I	GCTNAGC	2 cut(s)	15, 216
BpuEI	CTTGAG	3 cut(s)	209, 211, 308
BsaHI	GRCGYC	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
BseMII	CTCAG	2 cut(s)	29, 120
Bsh1236I	CGCG	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	16, 197
Bsp1286I	GDGCHC	2 cut(s)	16, 197
Bsp1720I	GCTNAGC	2 cut(s)	15, 216
BspACI	CCGC	2 cut(s)	158, 220
BspCNI	CTCAG	2 cut(s)	28, 119
BspFNI	CGCG	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	15, 106, 216, 260
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	158
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	3 cut(s)	265, 275, 348
CviJI	RGCY	6 cut(s)	14, 166, 195, 215, 223, 328
CviKI_1	RGCY	6 cut(s)	14, 166, 195, 215, 223, 328
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	15, 106, 216, 260
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	2 cut(s)	14, 195
Eco24I	GRGCYC	2 cut(s)	16, 197
Eco53kI	GAGCTC	2 cut(s)	14, 195
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	2 cut(s)	14, 195
EcoT38I	GRGCYC	2 cut(s)	16, 197
FaeI	CATG	3 cut(s)	268, 278, 351
FaiI	YATR	3 cut(s)	266, 276, 349
FatI	CATG	3 cut(s)	264, 274, 347
Fnu4HI	GCNGC	1 cut(s)	221
FriOI	GRGCYC	2 cut(s)	16, 197
Fsp4HI	GCNGC	1 cut(s)	221
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	221
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	268, 278, 351
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	302, 332
HphI	GGTGA	2 cut(s)	172, 242
Hpy188I	TCNGA	2 cut(s)	37, 52
Hpy188III	TCNNGA	2 cut(s)	108, 238
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	4 cut(s)	15, 106, 216, 260
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	268, 278, 351
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	1 cut(s)	93
LweI	GCATC	2 cut(s)	143, 328
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	4 cut(s)	94, 153, 195, 290
MhlI	GDGCHC	2 cut(s)	16, 197
MluCI	AATT	3 cut(s)	5, 42, 61
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	58, 86
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	60, 297
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	268, 278, 351
NmuCI	GTSAC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp124BI	GAGCTC	2 cut(s)	16, 197
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	2 cut(s)	16, 197
SaqAI	TTAA	2 cut(s)	60, 297
SatI	GCNGC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	16, 197
SetI	ASST	7 cut(s)	16, 33, 97, 197, 217, 237, 330
SfaNI	GCATC	2 cut(s)	143, 328
SmlI	CTYRAG	3 cut(s)	190, 224, 323
SmoI	CTYRAG	3 cut(s)	190, 224, 323
Sse9I	AATT	3 cut(s)	5, 42, 61
SsiI	CCGC	2 cut(s)	158, 220
SstI	GAGCTC	2 cut(s)	16, 197
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	91, 151
TasI	AATT	3 cut(s)	5, 42, 61
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	60, 297
Tru9I	TTAA	2 cut(s)	60, 297
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	17, 291
XmnI	GAANNNNTTC	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.