Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004881

Physical Location & Seq

Genomic Coordinates Forward (+)

21588288 .. 21592326

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATGTAGACATAGTTGCTTCTACGTTCAAGGTTTCACCTGCTACTATCATTGTTGCTGCAATTGATTTATCTGTTGTAAAAAATTGGTCTGCAAGGTCTGAAAAAAAGGAGAAGCTTGAATCTATCAATCAAGATTGGAAGAATTTTTGGGTGGAGCTATCGGTGATTTTTGCTCAAGTTGTATCTAGCTGGAGCTATCGGTGGTTCAGTCTTTTACTTGGAGCACCATACCTAGATGTACTTACCGCCAGAGGGAAAGATCTAAGGCATGCATCACCAGTTCGATGGAGTTCGGTTCTATTAAGCATCATAGACATTTCTGCTCCTAGATTGCATCAACAGGTAATGAAGCACCTGGATGGAAACAACCACAGTCAGCTTTACAATGTCAAGAAGGGTAAGATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

9.74

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004881)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114841 RchiOBHm_Chr4g0394041 RchiOBHm_Chr5g0027701 RchiOBHm_Chr5g0040341
rosa_laevigata	RLG00000018218
rosa_multiflora	Rmu_sc0007341.1_g000037
rosa_roxburghii	Rroxscaffold_178G00437430 Rroxscaffold_180G00433520 Rroxscaffold_1G00002770 Rroxscaffold_1G00035020 Rroxscaffold_1G00063620 Rroxscaffold_1G00071510 Rroxscaffold_4G00312050 Rroxscaffold_4G00312060 Rroxscaffold_4G00316650 Rroxscaffold_7G00205600
rosa_rugosa	Rorug04G0458600 Rorug07G0190100
rosa_samantha	Rh1CG078100 Rh1DG149700 Rh2BG246300 Rh2CG254100 Rh2DG439800 Rh4AG097400 Rh4AG414200 Rh4CG093300 Rh5AG110100 Rh5CG213300 Rh7BG058300
rosa_wichuraiana	Rw5G016900 Rw6G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	31, 122
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	5 cut(s)	118, 160, 192, 198, 382
AluI	AGCT	5 cut(s)	118, 160, 192, 198, 382
Alw21I	GWGCWC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	30, 178, 270
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	282, 356
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	3 cut(s)	189, 236, 330
BfuAI	ACCTGC	1 cut(s)	49
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	3 cut(s)	284, 318, 346
BpmI	CTGGAG	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	2 cut(s)	8, 275
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	5, 272
CviJI	RGCY	5 cut(s)	118, 160, 192, 198, 382
CviKI_1	RGCY	5 cut(s)	118, 160, 192, 198, 382
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	357
EcoT22I	ATGCAT	2 cut(s)	6, 277
FaeI	CATG	2 cut(s)	8, 275
FaiI	YATR	6 cut(s)	6, 14, 232, 273, 314, 410
FatI	CATG	2 cut(s)	4, 271
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	3 cut(s)	189, 236, 330
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	214
Hin1II	CATG	2 cut(s)	8, 275
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	3 cut(s)	30, 178, 270
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	134, 394
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	4, 62, 95, 275, 337
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	8, 275
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	4 cut(s)	157, 195, 224, 331
LpnPI	CCDG	7 cut(s)	54, 178, 265, 294, 329, 344, 371
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	284, 318, 346
MaeI	CTAG	3 cut(s)	189, 236, 330
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	63, 85, 145
MnlI	CCTC	1 cut(s)	248
Mph1103I	ATGCAT	2 cut(s)	6, 277
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	359
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	8, 275
NsiI	ATGCAT	2 cut(s)	6, 277
NspI	RCATGY	2 cut(s)	8, 275
PaeI	GCATGC	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	3 cut(s)	284, 318, 346
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	63, 85, 145
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	3 cut(s)	189, 236, 330
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	63, 85, 145
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	365
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	2 cut(s)	8, 275
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	3 cut(s)	189, 236, 330
Zsp2I	ATGCAT	2 cut(s)	6, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.