Rorug07G0190100

C3HC zinc finger-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004881
Physical Location & Seq
Reverse (-)
16071155 .. 16072850
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0190100.1

Sequence Viewer

Length: 1581 bp
ATGGGGTCATCACTGTGGGGTACTAGCAATCATGACAAAGGGGAAAACCTTCCAGCAATTTCCACACTCTTGTTCATGGTGTTTACTCTGCTCTGGTTCTTATGGATTTGGAAGAAACCGAATAGGAACCCTACACCTCCATTGCCACCAGGCCCTCGTGGTCTGCCGCTACTCGGATATCTTCCATTTCTTGGTACAAACCTCCACCTAGAATTCACAGACATGGCAAGGGTTTATGGCCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGCATTGTGGTGAGCTCACCTAAGCTTGTGAAACAAGTGGTTCGTGACCATGACACAACATTTTCCAACCGTGACCCTACAATTGCTGCTCTAGTGGGGTCATATGGAGCATCCGACATTGCATTTGGATCGTATGGTTCAGATTGGAGGAAGCTGCGCAAGGTGTTTGTGAGTCAGATGCTAAGCAAAATCAATCTTGATGATGGCTATGCTCTGAGAAAAGAGGAGGTGCACAGGTCGATCAGTCATATTTATCATGACAAAATTGGAACCCAAACTGATTTGGGCGAGTTTGCATTCTCCACAGTAATCAACGCAACTTTGCGTATGCTATGGGGTGCAACTCTACAAGGGACTGATTTTAGTGAAGACTATAGGAAATTGGTGGCAGAAATTGTAGATCTATTTGCGAAACCAAACATTTCGGACTATTTTCCTGTGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAGCAAAGAAAGTTCAATCCGCAATTGACAAGATTCTAAGTTGTGCCATAGAAGAACGGATGAAGAAGCTGGCCTCAGCCAAAAATGGGGGAGTACAACAAAAACATGAGAGGAAGGACTTTCTGCAGTTCCTCTTGGAGAACAATCATAATCATGAAGATGGTTCAACATCCTTTACAGGGCAACAACTGAAGGCCTTGCTCATGGATATCGTGGTGGGTGGAACTGACACTACGGCAACAACAATGGAATGGGTTCTTACTGAGCTGATGCAGCACCCAGAAGAAATGATAAGAGTTCAAGAAGAACTGACACAAATTGTGGGTTTGAACAACTTGGTTGAAGAGTTTCATTTGCCAAAATTACATCACCTAGATGCTGTGATCAAGGAGACATTTCGCTTGCACCCTGCACTGCCCCTTCTAGTGCCCCGGCGTTCAAGCCAACCTACCACCATTGGTGGCTATTACATACCAAAAGGTTCCATTGTGTTTCTCAATGCTTGGGCCATACACAGAGATCCAAGTGTTTGGGACGATCCCTTGGAATTTAGACCCCAGAGGTTCCTAAATCCAAGCAATAGCTTTGATTATCAGGGCAATAAATTTCAGTTTCTTCCATTTGGTTCTGGGAGGAGAGTATGTGCCGGGATTACCTTAGCAGAAAGGATGCTGATCTATGCGTTGGCTTCATTCTTGCATTCGTTCGAGTGGAAATTGCCTAATGACGAAAAGCTTGACCTTTCAGACAAATTTGGGATTGTGACAAAGAAAAACACTCCACTTATTGCTGTACCAACACCCAGGTTATCCAATTTGGAGCTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC

Protein Analysis

526

Amino Acids

59.55

Weight (kDa)

8.21

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 509 1e-107 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 2 cut(s) 167, 768
AclWI GGATC 3 cut(s) 409, 1262, 1280
AcsI RAATTY 4 cut(s) 212, 1295, 1352, 1499
AcuI CTGAAG 1 cut(s) 959
AfaI GTAC 5 cut(s) 22, 196, 265, 843, 1542
AfiI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
AgsI TTSAA 6 cut(s) 764, 915, 1049, 1078, 1091, 1188
AjnI CCWGG 2 cut(s) 148, 1550
AluBI AGCT 8 cut(s) 288, 298, 427, 817, 1015, 1332, 1483, 1570
AluI AGCT 8 cut(s) 288, 298, 427, 817, 1015, 1332, 1483, 1570
Alw21I GWGCWC 3 cut(s) 290, 507, 1572
Alw26I GTCTC 1 cut(s) 1133
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 3 cut(s) 409, 1262, 1280
AoxI GGCC 5 cut(s) 151, 238, 819, 942, 1254
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 3 cut(s) 359, 427, 1021
ApoI RAATTY 4 cut(s) 212, 1295, 1352, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 3 cut(s) 48, 1002, 1095
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 152, 239, 1254
AsuC2I CCSGG 2 cut(s) 1180, 1396
AsuHPI GGTGA 3 cut(s) 282, 295, 1109
BaeGI GKGCMC 2 cut(s) 507, 1179
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 290, 1572
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 3 cut(s) 290, 507, 1572
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 3 cut(s) 346, 414, 1033
BccI CCATC 2 cut(s) 470, 902
BceAI ACGGC 1 cut(s) 999
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciT130I CCWGG 2 cut(s) 150, 1552
BclI TGATCA 1 cut(s) 1131
BcnI CCSGG 2 cut(s) 1180, 1396
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 5 cut(s) 24, 209, 365, 1121, 1172
BfmI CTRYAG 2 cut(s) 646, 872
BglII AGATCT 1 cut(s) 673
BisI GCNGC 4 cut(s) 167, 360, 428, 1022
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 4 cut(s) 168, 361, 429, 1023
Bme1390I CCNGG 4 cut(s) 150, 1180, 1396, 1552
BmgT120I GGNCC 3 cut(s) 152, 239, 1254
BmiI GGNNCC 5 cut(s) 128, 265, 544, 1231, 1313
BmrFI CCNGG 4 cut(s) 150, 1180, 1396, 1552
BmsI GCATC 5 cut(s) 392, 441, 1008, 1114, 1407
BpiI GAAGAC 1 cut(s) 648
Bpu10I CCTNAGC 3 cut(s) 294, 823, 1405
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 2 cut(s) 1180, 1396
BsaBI GATNNNNATC 1 cut(s) 1421
BsaJI CCNNGG 3 cut(s) 1178, 1290, 1550
BsaXI ACNNNNNCTCC 2 cut(s) 1375, 1405
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
Bse3DI GCAATG 2 cut(s) 140, 390
Bse8I GATNNNNATC 1 cut(s) 1421
BseBI CCWGG 2 cut(s) 150, 1552
BseDI CCNNGG 3 cut(s) 1178, 1290, 1550
BseGI GGATG 4 cut(s) 383, 813, 917, 1422
BseJI GATNNNNATC 1 cut(s) 1421
BseLI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
BseMI GCAATG 2 cut(s) 140, 390
BseMII CTCAG 3 cut(s) 479, 837, 1002
BseRI GAGGAG 2 cut(s) 512, 1396
BseSI GKGCMC 2 cut(s) 507, 1179
BseXI GCAGC 3 cut(s) 346, 414, 1033
BsgI GTGCAG 1 cut(s) 1143
BshFI GGCC 5 cut(s) 153, 240, 821, 944, 1256
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 290, 507, 1572
BsiSI CCGG 2 cut(s) 1180, 1395
BslFI GGGAC 2 cut(s) 640, 1295
BslI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
BsmAI GTCTC 1 cut(s) 1133
BsmFI GGGAC 2 cut(s) 640, 1295
BsmI GAATGC 2 cut(s) 569, 1447
BsnI GGCC 5 cut(s) 153, 240, 821, 944, 1256
Bsp1286I GDGCHC 4 cut(s) 290, 507, 1179, 1572
Bsp143I GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 167, 768
BspANI GGCC 5 cut(s) 153, 240, 821, 944, 1256
BspCNI CTCAG 3 cut(s) 480, 836, 1003
BspHI TCATGA 3 cut(s) 31, 529, 901
BspLI GGNNCC 5 cut(s) 128, 265, 544, 1231, 1313
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 3 cut(s) 409, 1262, 1280
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 140, 390
BssECI CCNNGG 3 cut(s) 1178, 1290, 1550
BssMI GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 1290
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 150, 1552
Bst4CI ACNGT 3 cut(s) 15, 344, 580
Bst6I CTCTTC 1 cut(s) 1086
BstC8I GCNNGC 4 cut(s) 717, 750, 819, 1151
BstDEI CTNAG 7 cut(s) 294, 455, 488, 785, 823, 1011, 1405
BstF5I GGATG 4 cut(s) 383, 813, 917, 1422
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 7 cut(s) 404, 516, 676, 1134, 1270, 1288, 1425
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
BstMWI GCNNNNNNNGC 1 cut(s) 1021
BstNI CCWGG 2 cut(s) 150, 1552
BstSCI CCNGG 4 cut(s) 148, 1178, 1394, 1550
BstSFI CTRYAG 2 cut(s) 646, 872
BstSLI GKGCMC 2 cut(s) 507, 1179
BstV1I GCAGC 3 cut(s) 346, 414, 1033
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 2 cut(s) 673, 1267
BstXI CCANNNNNNTGG 1 cut(s) 1278
BstYI RGATCY 2 cut(s) 673, 1267
BsuRI GGCC 5 cut(s) 153, 240, 821, 944, 1256
BtsCI GGATG 4 cut(s) 383, 813, 917, 1422
BtsI GCAGTG 1 cut(s) 1160
BtsIMutI CAGTG 2 cut(s) 11, 1160
Cac8I GCNNGC 4 cut(s) 717, 750, 819, 1151
CciI TCATGA 3 cut(s) 31, 529, 901
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 152, 239, 1254
Csp6I GTAC 5 cut(s) 21, 195, 264, 842, 1541
CviAII CATG 8 cut(s) 32, 76, 223, 323, 530, 854, 902, 952
CviQI GTAC 5 cut(s) 21, 195, 264, 842, 1541
DdeI CTNAG 7 cut(s) 294, 455, 488, 785, 823, 1011, 1405
DpnI GATC 7 cut(s) 403, 515, 675, 1133, 1269, 1287, 1424
DpnII GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
Ecl136II GAGCTC 2 cut(s) 288, 1570
Eco130I CCWWGG 1 cut(s) 1290
Eco147I AGGCCT 1 cut(s) 944
Eco24I GRGCYC 2 cut(s) 290, 1572
Eco32I GATATC 2 cut(s) 179, 958
Eco53kI GAGCTC 2 cut(s) 288, 1570
Eco57I CTGAAG 1 cut(s) 959
EcoICRI GAGCTC 2 cut(s) 288, 1570
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 148, 1550
EcoRV GATATC 2 cut(s) 179, 958
EcoT14I CCWWGG 1 cut(s) 1290
EcoT38I GRGCYC 2 cut(s) 290, 1572
ErhI CCWWGG 1 cut(s) 1290
FaeI CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
FaqI GGGAC 2 cut(s) 640, 1295
FatI CATG 8 cut(s) 31, 75, 222, 322, 529, 853, 901, 951
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 1131
Fnu4HI GCNGC 4 cut(s) 167, 360, 428, 1022
FokI GGATG 4 cut(s) 370, 820, 904, 1429
FriOI GRGCYC 2 cut(s) 290, 1572
Fsp4HI GCNGC 4 cut(s) 167, 360, 428, 1022
FspBI CTAG 5 cut(s) 24, 209, 365, 1121, 1172
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 4 cut(s) 167, 360, 428, 1022
HaeIII GGCC 5 cut(s) 153, 240, 821, 944, 1256
HapII CCGG 2 cut(s) 1180, 1395
HhaI GCGC 1 cut(s) 432
Hin1II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HindIII AAGCTT 2 cut(s) 296, 1481
HinfI GANTC 2 cut(s) 445, 781
HpaII CCGG 2 cut(s) 1180, 1395
HphI GGTGA 3 cut(s) 282, 295, 1109
Hpy166II GTNNAC 2 cut(s) 84, 505
Hpy188I TCNGA 7 cut(s) 176, 388, 415, 450, 489, 700, 1495
Hpy188III TCNNGA 6 cut(s) 32, 317, 470, 530, 902, 1049
Hpy8I GTNNAC 2 cut(s) 84, 505
HpyAV CCTTC 4 cut(s) 59, 856, 934, 1178
HpyCH4III ACNGT 3 cut(s) 15, 344, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 1021
HpyF3I CTNAG 7 cut(s) 294, 455, 488, 785, 823, 1011, 1405
Hsp92II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
HspAI GCGC 1 cut(s) 430
KpnI GGTACC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 1131
Kzo9I GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
LmnI GCTCC 2 cut(s) 380, 1567
Lsp1109I GCAGC 3 cut(s) 346, 414, 1033
LweI GCATC 5 cut(s) 392, 441, 1008, 1114, 1407
MaeI CTAG 5 cut(s) 24, 209, 365, 1121, 1172
MaeIII GTNAC 3 cut(s) 317, 344, 1510
MalI GATC 7 cut(s) 403, 515, 675, 1133, 1269, 1287, 1424
MboI GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
MfeI CAATTG 2 cut(s) 354, 771
MflI RGATCY 2 cut(s) 673, 1267
MhlI GDGCHC 4 cut(s) 290, 507, 1179, 1572
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 3 cut(s) 280, 363, 411
MroXI GAANNNNTTC 3 cut(s) 48, 1002, 1095
MseI TTAA 1 cut(s) 1579
MslI CAYNNNNRTG 6 cut(s) 13, 221, 281, 900, 906, 1122
MspI CCGG 2 cut(s) 1180, 1395
MspR9I CCNGG 4 cut(s) 150, 1180, 1396, 1552
MunI CAATTG 2 cut(s) 354, 771
Mva1269I GAATGC 2 cut(s) 569, 1447
MvaI CCWGG 2 cut(s) 150, 1552
MwoI GCNNNNNNNGC 1 cut(s) 1021
NciI CCSGG 2 cut(s) 1180, 1396
NdeI CATATG 1 cut(s) 376
NdeII GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
NlaIII CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
NlaIV GGNNCC 5 cut(s) 128, 265, 544, 1231, 1313
NmuCI GTSAC 3 cut(s) 317, 344, 1510
NsbI TGCGCA 1 cut(s) 431
PagI TCATGA 3 cut(s) 31, 529, 901
PceI AGGCCT 1 cut(s) 944
PctI GAATGC 2 cut(s) 569, 1447
PdmI GAANNNNTTC 3 cut(s) 48, 1002, 1095
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 4 cut(s) 168, 361, 429, 1023
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
Psp124BI GAGCTC 2 cut(s) 290, 1572
Psp6I CCWGG 2 cut(s) 148, 1550
PspGI CCWGG 2 cut(s) 148, 1550
PspN4I GGNNCC 5 cut(s) 128, 265, 544, 1231, 1313
PspPI GGNCC 3 cut(s) 152, 239, 1254
PsrI GAACNNNNNNTAC 2 cut(s) 964, 996
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 2 cut(s) 673, 1267
RsaI GTAC 5 cut(s) 22, 196, 265, 843, 1542
RsaNI GTAC 5 cut(s) 21, 195, 264, 842, 1541
RseI CAYNNNNRTG 6 cut(s) 13, 221, 281, 900, 906, 1122
SacI GAGCTC 2 cut(s) 290, 1572
SaqAI TTAA 1 cut(s) 1579
SatI GCNGC 4 cut(s) 167, 360, 428, 1022
Sau3AI GATC 7 cut(s) 401, 513, 673, 1131, 1267, 1285, 1422
Sau96I GGNCC 3 cut(s) 152, 239, 1254
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 4 cut(s) 150, 1180, 1396, 1552
SduI GDGCHC 4 cut(s) 290, 507, 1179, 1572
SfaNI GCATC 5 cut(s) 392, 441, 1008, 1114, 1407
SfcI CTRYAG 2 cut(s) 646, 872
SmiMI CAYNNNNRTG 6 cut(s) 13, 221, 281, 900, 906, 1122
SseBI AGGCCT 1 cut(s) 944
SsiI CCGC 2 cut(s) 167, 768
SspMI CTAG 5 cut(s) 24, 209, 365, 1121, 1172
SstI GAGCTC 2 cut(s) 290, 1572
StuI AGGCCT 1 cut(s) 944
StyD4I CCNGG 4 cut(s) 148, 1178, 1394, 1550
StyI CCWWGG 1 cut(s) 1290
TaaI ACNGT 3 cut(s) 15, 344, 580
TaqI TCGA 2 cut(s) 512, 1455
TatI WGTACW 1 cut(s) 841
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 1 cut(s) 1579
Tru9I TTAA 1 cut(s) 1579
TscAI CASTG 2 cut(s) 18, 1167
TseFI GTSAC 3 cut(s) 317, 344, 1510
TseI GCWGC 3 cut(s) 359, 427, 1021
Tsp45I GTSAC 3 cut(s) 317, 344, 1510
TspDTI ATGAA 5 cut(s) 64, 824, 918, 1088, 1428
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 2 cut(s) 18, 1167
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 503
XapI RAATTY 4 cut(s) 212, 1295, 1352, 1499
XmnI GAANNNNTTC 3 cut(s) 48, 1002, 1095
XspI CTAG 5 cut(s) 24, 209, 365, 1121, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.