RchiOBHm_Chr2g0155011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003702
Physical Location & Seq
Reverse (-)
72053987 .. 72054710
724 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52393

Sequence Viewer

Length: 390 bp
ATGAGAAAATTTTCTGAGTTCTACTTTTCCACTACCTCTTTGATTTTATTATTTTGGATTCGTGCACGAGACCAAAGATTGTGTATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACCACTTCGAGTTCGGGTCTTTTCAAAAATCCGCCGATGAGGTTTTCTTCGGCGACAACGCCCGGATGGGTCCGGTTTTTCCAGGTCTTCAACCGCAACCGTATAAGTCAACGGGATCTAAACGACACCGATGACGCCATGCCGATGTTGTCGTTGTCCACGTCGGCCGGTTTCGTCTCCTTCCCATTGCAATTTGCAAGAATATGCAAGAATATCAAGTCGACTGGAGAAGAAGATAAACCAAACTCATCTCCTGGGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

10.58

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 344
AciI CCGC 2 cut(s) 155, 217
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 258
AgsI TTSAA 2 cut(s) 148, 214
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 204, 376
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 63, 304
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 288
ApaLI GTGCAC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 67
BauI CACGAG 1 cut(s) 66
BbsI GAAGAC 2 cut(s) 125, 202
Bbv12I GWGCWC 1 cut(s) 67
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 206, 378
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 63, 304
Bme1390I CCNGG 3 cut(s) 186, 206, 378
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 3 cut(s) 186, 206, 378
BpiI GAAGAC 2 cut(s) 125, 202
BpmI CTGGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 2 cut(s) 206, 378
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 67
BseX3I CGGCCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 186, 196, 291
BsmAI GTCTC 2 cut(s) 63, 304
BsmBI CGTCTC 1 cut(s) 304
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 155, 217
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 206, 378
Bst4CI ACNGT 1 cut(s) 224
BstACI GRCGYC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 63, 304
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 2 cut(s) 206, 378
BstSCI CCNGG 3 cut(s) 184, 204, 376
BstSLI GKGCMC 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 125, 202
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 290
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 266
CviAII CATG 1 cut(s) 262
CviJI RGCY 1 cut(s) 290
CviKI_1 RGCY 1 cut(s) 290
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
EciI GGCGGA 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 204, 376
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 86, 227, 263, 328
FatI CATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 344
FokI GGATG 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 290
HapII CCGG 3 cut(s) 186, 196, 291
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 233, 345
HindII GTYRAC 2 cut(s) 233, 345
HinfI GANTC 1 cut(s) 58
HpaII CCGG 3 cut(s) 186, 196, 291
Hpy166II GTNNAC 4 cut(s) 65, 233, 282, 345
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 4 cut(s) 65, 233, 282, 345
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 65, 313, 320, 330
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 191, 199, 209, 218, 304, 333, 363
MaeII ACGT 1 cut(s) 284
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 8, 314
MnlI CCTC 2 cut(s) 46, 156
MroXI GAANNNNTTC 1 cut(s) 10
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 3 cut(s) 186, 196, 291
MspR9I CCNGG 3 cut(s) 186, 206, 378
MvaI CCWGG 2 cut(s) 206, 378
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 128, 281
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 204, 376
PspGI CCWGG 2 cut(s) 204, 376
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 266
SalI GTCGAC 1 cut(s) 343
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 3 cut(s) 186, 206, 378
SduI GDGCHC 1 cut(s) 67
SetI ASST 4 cut(s) 38, 167, 210, 287
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 8, 314
SsiI CCGC 2 cut(s) 155, 217
StyD4I CCNGG 3 cut(s) 184, 204, 376
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 131, 344
TasI AATT 2 cut(s) 8, 314
TfiI GAWTC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 104
VneI GTGCAC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.