Rh2DG532100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003702
Physical Location & Seq
Reverse (-)
76187584 .. 76189294
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG532100.1

Sequence Viewer

Length: 363 bp
ATGAAGAAGAAGAAGACCACTTCGAGTTCGGGTCTTTTCAAAAATCCGCCGTTGAGGTTTTCTTCGGCGACAACACCCGGATGGGTCCGGTTTTTCCAGGTCTTCAACCGCAACCGTATAAGTGAACGGGATCTAAACGACACCGACGATGCCATGCCGATGTTGTCGCTGTCCACGTCCGTCGGTTTCGTCTCCTTCCCATTGCAATTTGCAAGAATAGCAAGTCGACCGGAGAAGAAGATAAACCAAACTCATCTCCTGGCCTACCCTCTTGATCTCCAGTCGAGTTATGAAAACGACGAACTGCTTATATGGTACGATGTAGTTGAAAAACTTAAGAATAAAATTCTTTTTGTACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.92

Weight (kDa)

9.79

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 47, 109
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 2 cut(s) 317, 357
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 40, 106, 329
AjiI CACGTC 1 cut(s) 177
AjnI CCWGG 2 cut(s) 96, 258
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 20, 94
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 98, 260
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 196
BfrI CTTAAG 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 78, 98, 260
Bme18I GGWCC 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 3 cut(s) 78, 98, 260
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 20, 94
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 78
BsaWI WCCGGW 2 cut(s) 87, 229
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 98, 260
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 3 cut(s) 78, 88, 230
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 130, 274
BspACI CCGC 2 cut(s) 47, 109
BspANI GGCC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 280
BssMI GATC 2 cut(s) 130, 274
Bst2UI CCWGG 2 cut(s) 98, 260
Bst4CI ACNGT 2 cut(s) 116, 360
BstAFI CTTAAG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 2 cut(s) 133, 277
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 130, 274
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 98, 260
BstSCI CCNGG 3 cut(s) 76, 96, 258
BstV2I GAAGAC 2 cut(s) 20, 94
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 263
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 316, 356
CviAII CATG 1 cut(s) 154
CviJI RGCY 1 cut(s) 263
CviKI_1 RGCY 1 cut(s) 263
CviQI GTAC 2 cut(s) 316, 356
DpnI GATC 2 cut(s) 132, 276
DpnII GATC 2 cut(s) 130, 274
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 96, 258
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 119, 155, 291, 311, 313
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 226
FokI GGATG 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 263
HapII CCGG 3 cut(s) 78, 88, 230
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HpaII CCGG 3 cut(s) 78, 88, 230
Hpy166II GTNNAC 3 cut(s) 125, 174, 227
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 3 cut(s) 125, 174, 227
Hpy99I CGWCG 3 cut(s) 149, 185, 302
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 116, 360
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 205, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 130, 274
LpnPI CCDG 8 cut(s) 83, 91, 101, 110, 243, 245, 272, 293
LweI GCATC 1 cut(s) 139
MaeII ACGT 1 cut(s) 176
MalI GATC 2 cut(s) 132, 276
MboI GATC 2 cut(s) 130, 274
MboII GAAGA 8 cut(s) 16, 19, 22, 25, 54, 94, 247, 250
MflI RGATCY 1 cut(s) 130
MluCI AATT 2 cut(s) 206, 345
MnlI CCTC 2 cut(s) 48, 279
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 79, 158
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 78, 88, 230
MspR9I CCNGG 3 cut(s) 78, 98, 260
MvaI CCWGG 2 cut(s) 98, 260
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 78
NdeII GATC 2 cut(s) 130, 274
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 173
Psp6I CCWGG 2 cut(s) 96, 258
PspGI CCWGG 2 cut(s) 96, 258
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 317, 357
RsaNI GTAC 2 cut(s) 316, 356
RseI CAYNNNNRTG 2 cut(s) 79, 158
SalI GTCGAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 2 cut(s) 130, 274
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 78, 98, 260
SetI ASST 3 cut(s) 59, 102, 179
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 79, 158
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 206, 345
SsiI CCGC 2 cut(s) 47, 109
StyD4I CCNGG 3 cut(s) 76, 96, 258
TaaI ACNGT 2 cut(s) 116, 360
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 23, 226, 284
TasI AATT 2 cut(s) 206, 345
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 17, 306
TspGWI ACGGA 1 cut(s) 169
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.