Rh1DG039300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003702
Physical Location & Seq
Reverse (-)
6305793 .. 6306254
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG039300.1

Sequence Viewer

Length: 462 bp
ATGGCCAATTCACAGATTTATGTACTGTTTCTACAAACTGTGAAGCGAATTACCATTAAGTTTGAAGGGGGTGATGCAGTTCTTGAAGATGGTTACTTCGAAGAGAGGATGAAATTCAAGAGTCTCATTAGGTCGGTCAGAAACCTGATATGTGCATCTGCAGAAGATGAATGGACTATACTGATCATCAATCCTAGGACTCACTCATGTAAGAAGATAAGAGAATATCATAGTGGAGACTTCGAGGATGCGCGACATCCCTTTGGTTTTGGCTATAGTGAGACTGAAAAGGAGCATCAGGTTGTAAGATTACACACAAGGATTTCAAAGAAAGAGCAAACCACCTATGGCAACATTTTCTCAGTCAAAGGCGCAAACTGGAGGAGAAGAGAGTTTACTAAGATCACAGTCAAATCCTTCTGCACAACAATTAAACAACCTAATAAAGACCCACAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

18.0

Weight (kDa)

9.38

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 4 cut(s) 65, 86, 118, 327
Alw26I GTCTC 3 cut(s) 128, 231, 275
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 194
AspLEI GCGC 2 cut(s) 253, 374
AsuHPI GGTGA 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 99
AvrII CCTAGG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BccI CCATC 1 cut(s) 83
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 128, 231, 275
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 159, 274
BlnI CCTAGG 1 cut(s) 194
BmsI GCATC 4 cut(s) 64, 164, 238, 304
BpmI CTGGAG 1 cut(s) 400
Bpu14I TTCGAA 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 3 cut(s) 114, 253, 256
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 3 cut(s) 128, 231, 275
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 183, 402
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 374
BspFNI CGCG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 183, 402
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 4 cut(s) 27, 40, 409, 456
Bst6I CTCTTC 2 cut(s) 96, 382
BstBI TTCGAA 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 361, 399
BstF5I GGATG 3 cut(s) 114, 253, 256
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 2 cut(s) 253, 374
BstKTI GATC 2 cut(s) 186, 405
BstMAI GTCTC 3 cut(s) 128, 231, 275
BstMBI GATC 2 cut(s) 183, 402
BstSFI CTRYAG 2 cut(s) 159, 274
BstUI CGCG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 114, 253, 256
CfoI GCGC 2 cut(s) 253, 374
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 5, 273
CviKI_1 RGCY 2 cut(s) 5, 273
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 361, 399
DpnI GATC 2 cut(s) 185, 404
DpnII GATC 2 cut(s) 183, 402
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 96, 382
EarI CTCTTC 2 cut(s) 96, 382
Eco130I CCWWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 210
FaiI YATR 7 cut(s) 21, 151, 179, 208, 231, 276, 348
FatI CATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 183
FokI GGATG 3 cut(s) 121, 243, 260
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 252, 373
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 253, 374
Hin1II CATG 1 cut(s) 210
Hin6I GCGC 2 cut(s) 251, 372
HinP1I GCGC 2 cut(s) 251, 372
HinfI GANTC 2 cut(s) 121, 199
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 83, 118
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 59, 427
HpyCH4III ACNGT 4 cut(s) 27, 40, 409, 456
HpyCH4V TGCA 4 cut(s) 77, 155, 161, 423
HpyF3I CTNAG 2 cut(s) 361, 399
Hsp92II CATG 1 cut(s) 210
HspAI GCGC 2 cut(s) 251, 372
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 402
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 158, 284, 364
LweI GCATC 4 cut(s) 64, 164, 238, 304
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 185, 404
MboI GATC 2 cut(s) 183, 402
MboII GAAGA 5 cut(s) 98, 113, 176, 226, 399
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 7, 48, 113, 429
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 130, 193
MnlI CCTC 3 cut(s) 99, 238, 375
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 57, 432
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 253
NdeII GATC 2 cut(s) 183, 402
NlaIII CATG 1 cut(s) 210
NspV TTCGAA 1 cut(s) 99
PleI GAGTC 2 cut(s) 129, 193
PpsI GAGTC 2 cut(s) 129, 193
PstI CTGCAG 1 cut(s) 163
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 57, 432
Sau3AI GATC 2 cut(s) 183, 402
SchI GAGTC 2 cut(s) 130, 193
SetI ASST 5 cut(s) 134, 147, 303, 347, 442
SfaNI GCATC 4 cut(s) 64, 164, 238, 304
SfcI CTRYAG 2 cut(s) 159, 274
SfuI TTCGAA 1 cut(s) 99
Sse9I AATT 4 cut(s) 7, 48, 113, 429
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 4 cut(s) 27, 40, 409, 456
TaqI TCGA 2 cut(s) 99, 243
TaqII GACCGA 1 cut(s) 124
TasI AATT 4 cut(s) 7, 48, 113, 429
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 2 cut(s) 57, 432
Tru9I TTAA 2 cut(s) 57, 432
TspDTI ATGAA 2 cut(s) 125, 183
XapI RAATTY 1 cut(s) 113
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.