Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Forward (+)

25705641 .. 25709214

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGAATATGTGGAGGTTCTTTAGGGAATCTGGACCAAGACCTCCTCAGGCAAATCAGTACACTGGCTGGAAACCAAACCCCAAGACATTTTGTGTGGGAAGTCGTTTTTACAATGGCCATTATTGGCCTAGGTCTCCTACTTTTCGCTCTTCTCATAGGAAATATGCAGAACTTTCTGCAGGCTTTTGGCCAGAGATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCGTTGTTTCAGCAAGTTGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTTTAAGATTGCTTCAGAAGGACTAAAGCACAGAGTCTTTGAGACATCACTGGCTGACGTTCAGGGAGATGAGGAGCATGCTTACAGTACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.42

Weight (kDa)

7.92

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	118, 191
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	62, 397
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	141, 344
AoxI	GGCC	3 cut(s)	118, 128, 191
ApeKI	GCWGC	2 cut(s)	233, 236
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	35
AvrII	CCTAGG	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	2 cut(s)	120, 193
BbvI	GCAGC	2 cut(s)	220, 223
BccI	CCATC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	141, 344
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	234, 237
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	235, 238
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	131, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	2 cut(s)	70, 363
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	131, 251
BseGI	GGATG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	70, 363
BseRI	GAGGAG	2 cut(s)	36, 395
BseXI	GCAGC	2 cut(s)	220, 223
BshFI	GGCC	3 cut(s)	120, 130, 193
BsmAI	GTCTC	2 cut(s)	141, 344
BsnI	GGCC	3 cut(s)	120, 130, 193
Bso31I	GGTCTC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	120, 130, 193
BspCNI	CTCAG	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	70, 363
BssECI	CCNNGG	2 cut(s)	131, 251
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	184, 387
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	141, 344
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 245, 254
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	220, 223
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	120, 130, 193
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	63, 356
Cac8I	GCNNGC	2 cut(s)	184, 387
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	61, 396
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	69, 120, 130, 186, 193, 292, 362
CviKI_1	RGCY	7 cut(s)	69, 120, 130, 186, 193, 292, 362
CviQI	GTAC	2 cut(s)	61, 396
DdeI	CTNAG	1 cut(s)	48
EaeI	YGGCCR	2 cut(s)	118, 191
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	389
FaiI	YATR	5 cut(s)	11, 159, 168, 288, 387
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	234, 237
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	234, 237
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	234, 237
HaeIII	GGCC	3 cut(s)	120, 130, 193
Hin1II	CATG	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	29, 342
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	33, 302
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	170, 182, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 245, 254
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	389
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	253, 382
Lsp1109I	GCAGC	2 cut(s)	220, 223
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	366
MboII	GAAGA	1 cut(s)	144
MlsI	TGGCCA	2 cut(s)	120, 193
MluNI	TGGCCA	2 cut(s)	120, 193
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	9, 54, 57, 373
Mox20I	TGGCCA	2 cut(s)	120, 193
MscI	TGGCCA	2 cut(s)	120, 193
MseI	TTAA	2 cut(s)	312, 403
Msp20I	TGGCCA	2 cut(s)	120, 193
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	233, 245, 254
NlaIII	CATG	1 cut(s)	389
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	235, 238
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	62, 397
RsaNI	GTAC	2 cut(s)	61, 396
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	312, 403
SatI	GCNGC	2 cut(s)	234, 237
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	6 cut(s)	20, 46, 137, 294, 369, 401
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	35
SphI	GCATGC	1 cut(s)	389
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	312, 403
Tru9I	TTAA	2 cut(s)	312, 403
TscAI	CASTG	2 cut(s)	70, 363
TseI	GCWGC	2 cut(s)	233, 236
TspRI	CASTG	2 cut(s)	70, 363
VpaK11BI	GGWCC	1 cut(s)	35
XceI	RCATGY	1 cut(s)	389
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.