Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Forward (+)

5130290 .. 5139715

Gene Structure 9426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGACCATTCTGTATTGGATTCTAATGCCTTGAAACCTAAATCAAGGCAAAAATTGATATCACGGACAACTCATTATCGTCAAAGGTATGCCTCTAGACTACCTAAACCACGTGCAAAATTGGATCATTCCTCTTCAATTGGTCTCCTCCAATATCATTTGCTAGAGCCATTTGGAATTGATATCTGCTGGGATGACGTCTGTTTTGGGTTAGCCCAGGTTGTAGCTGAGGGACTGTTTACCCAAGAAAATGTTGAAGGATCTGATGAGAGTGGTAGAAAGGCGTTCTGCTCACCTAGAAAGGATTTTACTGATGTCTTAGAATTTATTGGGTGTGAAACTGTTAATGCTTTAATATTGGATTGGGGTGAGAACAATATTGCCATTGCTACTGAAACTACTGCTCCTTGGGCGTTGTTTCAGCAAGAAGAAGAAGAAGTTTGGCATAAGCTTGACCATCCAAATATTTCAAATTTTGTTGGAGCTTCAATGGGAAGCTCGAATCTTAAAATCATTGCGAAAGGCACAACAAGTGATATAGGGAGGAAAGAGGTGCCACTGGGAATGGGTGCAGATTCTTCCCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

196

Amino Acids

21.76

Weight (kDa)

5.36

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	553
AclWI	GGATC	2 cut(s)	132, 268
AcsI	RAATTY	2 cut(s)	323, 472
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	34, 138, 257, 471, 489
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	227, 451, 485, 498
AluI	AGCT	4 cut(s)	227, 451, 485, 498
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	132, 268
ApoI	RAATTY	2 cut(s)	323, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	285, 380
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	553
BbrPI	CACGTG	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	465
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	3 cut(s)	96, 164, 297
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	216, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bse1I	ACTGG	1 cut(s)	564
Bse3DI	GCAATG	2 cut(s)	384, 513
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	216, 407
BseGI	GGATG	2 cut(s)	199, 457
BseMI	GCAATG	2 cut(s)	384, 513
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	591
BshNI	GGYRCC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	124, 260
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	132, 268
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	384, 513
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	2 cut(s)	216, 407
BssMI	GATC	2 cut(s)	124, 260
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	237, 343
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	228, 319
BstF5I	GGATG	2 cut(s)	199, 457
BstKTI	GATC	2 cut(s)	127, 263
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	124, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	199, 457
BtsIMutI	CAGTG	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	169, 215, 227, 451, 485, 498
CviKI_1	RGCY	6 cut(s)	169, 215, 227, 451, 485, 498
DdeI	CTNAG	2 cut(s)	228, 319
DpnI	GATC	2 cut(s)	126, 262
DpnII	GATC	2 cut(s)	124, 260
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	149
Eco32I	GATATC	2 cut(s)	60, 184
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	216
EcoRV	GATATC	2 cut(s)	60, 184
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaiI	YATR	3 cut(s)	90, 447, 539
FaqI	GGGAC	1 cut(s)	246
FokI	GGATG	2 cut(s)	206, 444
FspBI	CTAG	3 cut(s)	96, 164, 297
GsaI	CCCAGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	20, 502, 575
HphI	GGTGA	2 cut(s)	285, 380
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	265, 590
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	237, 343
HpyCH4IV	ACGT	2 cut(s)	112, 198
HpyCH4V	TGCA	2 cut(s)	116, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	228, 319
HpySE526I	ACGT	2 cut(s)	112, 198
Hsp92I	GRCGYC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	124, 260
LmnI	GCTCC	2 cut(s)	409, 482
LpnPI	CCDG	4 cut(s)	175, 203, 230, 545
MaeI	CTAG	3 cut(s)	96, 164, 297
MaeII	ACGT	2 cut(s)	112, 198
MalI	GATC	2 cut(s)	126, 262
MboI	GATC	2 cut(s)	124, 260
MboII	GAAGA	5 cut(s)	126, 440, 443, 446, 570
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	6 cut(s)	53, 119, 138, 177, 323, 472
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	6 cut(s)	103, 142, 158, 223, 537, 544
MseI	TTAA	3 cut(s)	345, 353, 507
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	124, 260
NlaIV	GGNNCC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	20, 502, 575
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	216
PspCI	CACGTG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	345, 353, 507
Sau3AI	GATC	2 cut(s)	124, 260
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	6 cut(s)	53, 119, 138, 177, 323, 472
SspI	AATATT	3 cut(s)	357, 379, 466
SspMI	CTAG	3 cut(s)	96, 164, 297
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	237, 343
TaiI	ACGT	2 cut(s)	115, 201
TaqI	TCGA	1 cut(s)	500
TasI	AATT	6 cut(s)	53, 119, 138, 177, 323, 472
TfiI	GAWTC	3 cut(s)	20, 502, 575
Tru1I	TTAA	3 cut(s)	345, 353, 507
Tru9I	TTAA	3 cut(s)	345, 353, 507
TscAI	CASTG	1 cut(s)	564
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	323, 472
XbaI	TCTAGA	1 cut(s)	95
XspI	CTAG	3 cut(s)	96, 164, 297
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.