Rw2G004910

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003702
Physical Location & Seq
Forward (+)
4624631 .. 4626059
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004910.1

Sequence Viewer

Length: 1182 bp
ATGAAGAAGCAGGAGCTAAGGATCAAGAGAGACGGGTTAAGAGACGACGAACTTCACCGTTGGCTGAGTAAGCCGCAGCTACTTCCCATGCTCATGCTCCCCACTAGTGAATCTGATAATGGTAGCAGCAGCGATCCCCAAACAAACCAAAGACCACTGTATAGCGTTTCAGAAAGAAAAATCTACAACAACATTAAAATTGGGTTATCAGTGCCTTACAATGAAAACTTTTGTGGCTCTAGCCAAGGTTGGTTGGCCTCGGCACACAAATCTATCGAAGAATGGCAAGAAAAACGAAAATTGAAGGTCATCCATGAAATAACTCTGCGGAACCCTTTCGGAAAAGCATCAGAGGCGATTCATCTTCCTCCGTATGTGCATTGCATCCCAACATTTTACCATCATGTTAAAGAATGGATCCCAAGAATTATCTTGTCTGCTAACCCTGCTTTGCATCCGGAAAACTATTATGTGCTCTTAGCATTCTATAGACCATTGCCGAACCGCATACCACGATTAGGTTCTGATTATTCTCCGCCGTTATCACTTATTAAAGGAGGACAAGAATCTTGGATCACGACCAACCGACTGCCTGCAGGTCTTCCAGATGATGCTATATTTTATAAAAACAATGTCTACTTGCTTCTTGAACGGGGATATTATAATATGGTAACCGTGGAAGTTAATAGCAGTAACCTTTTACCGCCGAAAGTAGACTATATACGTTTTAAACCTCGCCCTACTGATATTTTCCCTGCACATATATTGTTGGGAGCAACATATATCTTATTTTATGCATTTAATAAAACCTCCTTCGGCGTTTGCAAGATCGTGTTCAACGAGGAAGACGATTCCAATTATGAAGGCACTTCCACCGCTCAGCTGGTTGAGGTTAATTGCATTGGAGATGATGCAATATTCTTAGGTCAAAGTCAATCCCAGTGTGTTTTAGCTTCAAGTATTCCTGGCTGCAAGCCGAATTGCATATACTATGCCACAGAAAGTGTTAGACGGATCGAGAGTAAATGTGATTACTTAAGAAGTGAGATGGGTATTTTCAATTTAGGGGACAGAACTACAACACAACTACTTGACTCTGACTCTATAAATAACTGGAATTGGAACAAGATGAATATGCCACTTTGGATCCTACCATCATTAAACGTACCCCTAGGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

393

Amino Acids

44.91

Weight (kDa)

7.58

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 53 - 354 1.9e-25 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 624, 663
Acc36I ACCTGC 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 878
AccI GTMKAC 2 cut(s) 636, 714
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 6 cut(s) 74, 328, 505, 536, 704, 876
AclWI GGATC 8 cut(s) 29, 128, 412, 425, 581, 1022, 1141, 1154
AfaI GTAC 1 cut(s) 1167
AfiI CCNNNNNNNGG 1 cut(s) 518
AflII CTTAAG 1 cut(s) 1036
AgsI TTSAA 5 cut(s) 304, 650, 838, 957, 1060
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 964
AluBI AGCT 4 cut(s) 16, 79, 883, 953
AluI AGCT 4 cut(s) 16, 79, 883, 953
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 24, 36
AlwI GGATC 8 cut(s) 29, 128, 412, 425, 581, 1022, 1141, 1154
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 4 cut(s) 76, 126, 129, 969
Asp700I GAANNNNTTC 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 1171
AsuHPI GGTGA 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 1171
BamHI GGATCC 2 cut(s) 417, 1146
BbsI GAAGAC 2 cut(s) 593, 852
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 4 cut(s) 88, 138, 141, 956
BccI CCATC 3 cut(s) 408, 1042, 1162
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 966
BcoDI GTCTC 2 cut(s) 24, 36
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 3 cut(s) 105, 240, 1172
BfmI CTRYAG 2 cut(s) 487, 594
BfrI CTTAAG 1 cut(s) 1036
BfuAI ACCTGC 1 cut(s) 587
BisI GCNGC 5 cut(s) 74, 77, 127, 130, 970
BlnI CCTAGG 1 cut(s) 1171
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 5 cut(s) 75, 78, 128, 131, 971
Bme1390I CCNGG 1 cut(s) 966
BmiI GGNNCC 3 cut(s) 332, 419, 1148
BmrFI CCNGG 1 cut(s) 966
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 5 cut(s) 356, 393, 463, 601, 901
BmuI ACTGGG 1 cut(s) 934
BpiI GAAGAC 2 cut(s) 593, 852
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 879
BsaJI CCNNGG 4 cut(s) 244, 258, 675, 1171
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 2 cut(s) 940, 1118
Bse3DI GCAATG 2 cut(s) 379, 494
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 1 cut(s) 966
BseDI CCNNGG 4 cut(s) 244, 258, 675, 1171
BseGI GGATG 3 cut(s) 309, 384, 454
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 2 cut(s) 379, 494
BseMII CTCAG 2 cut(s) 56, 893
BseNI ACTGG 2 cut(s) 940, 1118
BseXI GCAGC 4 cut(s) 88, 138, 141, 956
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 2 cut(s) 24, 36
BsmBI CGTCTC 2 cut(s) 24, 36
BsmFI GGGAC 1 cut(s) 1082
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 477
Bsp13I TCCGGA 1 cut(s) 457
Bsp143I GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
Bsp1720I GCTNAGC 1 cut(s) 879
BspACI CCGC 6 cut(s) 74, 328, 505, 536, 704, 876
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 57, 892
BspEI TCCGGA 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 332, 419, 1148
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 587
BspPI GGATC 8 cut(s) 29, 128, 412, 425, 581, 1022, 1141, 1154
BspTI CTTAAG 1 cut(s) 1036
BsrBI CCGCTC 1 cut(s) 878
BsrDI GCAATG 2 cut(s) 379, 494
BsrI ACTGG 2 cut(s) 940, 1118
BssECI CCNNGG 4 cut(s) 244, 258, 675, 1171
BssMI GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
BssT1I CCWWGG 2 cut(s) 244, 1171
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 3 cut(s) 59, 159, 676
BstAFI CTTAAG 1 cut(s) 1036
BstC8I GCNNGC 2 cut(s) 594, 974
BstDEI CTNAG 5 cut(s) 17, 65, 478, 879, 922
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 3 cut(s) 309, 384, 454
BstKTI GATC 7 cut(s) 24, 136, 420, 576, 831, 1017, 1149
BstMAI GTCTC 2 cut(s) 24, 36
BstMBI GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 70, 353, 446
BstNI CCWGG 1 cut(s) 966
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 964
BstSFI CTRYAG 2 cut(s) 487, 594
BstV1I GCAGC 4 cut(s) 88, 138, 141, 956
BstV2I GAAGAC 2 cut(s) 593, 852
BstX2I RGATCY 2 cut(s) 417, 1146
BstYI RGATCY 2 cut(s) 417, 1146
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 3 cut(s) 309, 384, 454
BtsIMutI CAGTG 3 cut(s) 155, 216, 947
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 2 cut(s) 594, 974
Csp6I GTAC 1 cut(s) 1166
CviAII CATG 4 cut(s) 88, 94, 314, 404
CviQI GTAC 1 cut(s) 1166
DdeI CTNAG 5 cut(s) 17, 65, 478, 879, 922
DpnI GATC 7 cut(s) 23, 135, 419, 575, 830, 1016, 1148
DpnII GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
DraI TTTAAA 1 cut(s) 730
EciI GGCGGA 1 cut(s) 525
Eco130I CCWWGG 2 cut(s) 244, 1171
Eco91I GGTNACC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 964
EcoT14I CCWWGG 2 cut(s) 244, 1171
EcoT22I ATGCAT 1 cut(s) 799
ErhI CCWWGG 2 cut(s) 244, 1171
Esp3I CGTCTC 2 cut(s) 24, 36
FaeI CATG 4 cut(s) 91, 97, 317, 407
FaqI GGGAC 1 cut(s) 1082
FatI CATG 4 cut(s) 87, 93, 313, 403
FblI GTMKAC 2 cut(s) 636, 714
Fnu4HI GCNGC 5 cut(s) 74, 77, 127, 130, 970
FokI GGATG 3 cut(s) 296, 371, 441
Fsp4HI GCNGC 5 cut(s) 74, 77, 127, 130, 970
FspBI CTAG 3 cut(s) 105, 240, 1172
GluI GCNGC 5 cut(s) 74, 77, 127, 130, 970
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 458
Hin1II CATG 4 cut(s) 91, 97, 317, 407
HinfI GANTC 6 cut(s) 110, 358, 566, 851, 1094, 1100
HpaII CCGG 1 cut(s) 458
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 637, 715
Hpy188I TCNGA 6 cut(s) 115, 172, 341, 352, 526, 1099
Hpy188III TCNNGA 6 cut(s) 25, 458, 577, 605, 647, 1018
Hpy8I GTNNAC 2 cut(s) 637, 715
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 298, 823, 857
HpyCH4III ACNGT 3 cut(s) 59, 159, 676
HpyCH4IV ACGT 2 cut(s) 724, 1164
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 353, 446
HpyF3I CTNAG 5 cut(s) 17, 65, 478, 879, 922
HpySE526I ACGT 2 cut(s) 724, 1164
Hsp92II CATG 4 cut(s) 91, 97, 317, 407
Kpn2I TCCGGA 1 cut(s) 457
Kzo9I GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
LmnI GCTCC 3 cut(s) 13, 102, 773
Lsp1109I GCAGC 4 cut(s) 88, 138, 141, 956
LweI GCATC 5 cut(s) 356, 393, 463, 601, 901
MaeI CTAG 3 cut(s) 105, 240, 1172
MaeII ACGT 2 cut(s) 724, 1164
MaeIII GTNAC 2 cut(s) 670, 692
MalI GATC 7 cut(s) 23, 135, 419, 575, 830, 1016, 1148
MbiI CCGCTC 1 cut(s) 878
MboI GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
MboII GAAGA 5 cut(s) 16, 290, 356, 593, 857
MflI RGATCY 2 cut(s) 417, 1146
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 8 cut(s) 198, 299, 426, 856, 895, 979, 1060, 1117
MlyI GAGTC 2 cut(s) 1088, 1094
MnlI CCTC 8 cut(s) 268, 346, 378, 551, 744, 820, 835, 883
Mph1103I ATGCAT 1 cut(s) 799
MroI TCCGGA 1 cut(s) 457
MroXI GAANNNNTTC 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 883
MspCI CTTAAG 1 cut(s) 1036
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 1 cut(s) 966
MwoI GCNNNNNNNGC 3 cut(s) 70, 353, 446
NdeII GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
NlaIII CATG 4 cut(s) 91, 97, 317, 407
NlaIV GGNNCC 3 cut(s) 332, 419, 1148
NmeAIII GCCGAG 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 2 cut(s) 837, 846
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 4 cut(s) 110, 358, 566, 851
PkrI GCNGC 5 cut(s) 75, 78, 128, 131, 971
PleI GAGTC 2 cut(s) 1088, 1094
PpsI GAGTC 2 cut(s) 1088, 1094
PsiI TTATAA 2 cut(s) 624, 663
Psp6I CCWGG 1 cut(s) 964
PspEI GGTNACC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 964
PspN4I GGNNCC 3 cut(s) 332, 419, 1148
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 417, 1146
PvuII CAGCTG 1 cut(s) 883
RsaI GTAC 1 cut(s) 1167
RsaNI GTAC 1 cut(s) 1166
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 5 cut(s) 74, 77, 127, 130, 970
Sau3AI GATC 7 cut(s) 21, 133, 417, 573, 828, 1014, 1146
SbfI CCTGCAGG 1 cut(s) 598
SchI GAGTC 2 cut(s) 1088, 1094
ScrFI CCNGG 1 cut(s) 966
SdaI CCTGCAGG 1 cut(s) 598
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 5 cut(s) 356, 393, 463, 601, 901
SfcI CTRYAG 2 cut(s) 487, 594
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 1036
SmoI CTYRAG 1 cut(s) 1036
SpeI ACTAGT 1 cut(s) 104
Sse8387I CCTGCAGG 1 cut(s) 598
Sse9I AATT 8 cut(s) 198, 299, 426, 856, 895, 979, 1060, 1117
SsiI CCGC 6 cut(s) 74, 328, 505, 536, 704, 876
SspI AATATT 1 cut(s) 918
SspMI CTAG 3 cut(s) 105, 240, 1172
StyD4I CCNGG 1 cut(s) 964
StyI CCWWGG 2 cut(s) 244, 1171
TaaI ACNGT 3 cut(s) 59, 159, 676
TaiI ACGT 2 cut(s) 727, 1167
TaqI TCGA 2 cut(s) 276, 1017
TasI AATT 8 cut(s) 198, 299, 426, 856, 895, 979, 1060, 1117
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 4 cut(s) 110, 358, 566, 851
TscAI CASTG 3 cut(s) 162, 216, 947
TseI GCWGC 4 cut(s) 76, 126, 129, 969
TspDTI ATGAA 6 cut(s) 17, 237, 330, 350, 876, 1145
TspGWI ACGGA 2 cut(s) 360, 1027
TspRI CASTG 3 cut(s) 162, 216, 947
Vha464I CTTAAG 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmaJI CCTAGG 1 cut(s) 1171
XmiI GTMKAC 2 cut(s) 636, 714
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 3 cut(s) 105, 240, 1172
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.