Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Reverse (-)

59598656 .. 59599619

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCATCACGCTATTGGATATTCTCACCATTACTAGCTTACCCATCGATGGCGAGCCCTATGTGCATGGTCAATTCGACTCTACCACCTTTACTTCGACTATGTCCCAAACCGGCCATACGCCCATAGTTGTTCCTATCCGCGTGGGCTGTCTTCTTATATCGAGAGAACACAATGCGACCGGGGGCATTGTTTTCCTAGAAATTGGCCTCCATCGGGACCTCGCGACCCAAAGCATGCTCGCGCTGGTCGATCTTCCCAATTGGGCCAATGAAATTGCTCCCGTTGATGGGAATGCTTTGAAGAATATGAGCAATGGTGGTCGAAGTTTCCGTCAGCTGCCGGAGACAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.84

Weight (kDa)

5.37

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	144, 227, 245
AciI	CCGC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	115
AfiI	CCNNNNNNNGG	4 cut(s)	50, 217, 290, 291
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	2 cut(s)	39, 340
AluI	AGCT	2 cut(s)	39, 340
Alw26I	GTCTC	1 cut(s)	341
AoxI	GGCC	3 cut(s)	115, 208, 267
ApeKI	GCWGC	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	220, 267
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	4 cut(s)	44, 53, 222, 284
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	36, 200
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	220, 267
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 217, 290, 291
Bse118I	RCCGGY	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	322
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	4 cut(s)	50, 217, 290, 291
BseMI	GCAATG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	327
Bsh1236I	CGCG	3 cut(s)	144, 227, 245
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	117, 210, 269
BshVI	ATCGAT	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	114, 183, 344
BslFI	GGGAC	2 cut(s)	91, 233
BslI	CCNNNNNNNGG	4 cut(s)	50, 217, 290, 291
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	91, 233
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	117, 210, 269
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	253
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	3 cut(s)	117, 210, 269
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	3 cut(s)	144, 227, 245
BspLI	GGNNCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	56, 239, 243
BstFNI	CGCG	3 cut(s)	144, 227, 245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	253
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	3 cut(s)	144, 227, 245
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	117, 210, 269
BsuTUI	ATCGAT	1 cut(s)	48
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	56, 239, 243
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	220, 267
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	2 cut(s)	68, 238
CviJI	RGCY	7 cut(s)	39, 58, 117, 150, 210, 269, 340
CviKI_1	RGCY	7 cut(s)	39, 58, 117, 150, 210, 269, 340
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	2 cut(s)	71, 241
FaiI	YATR	8 cut(s)	63, 69, 104, 120, 128, 161, 239, 311
FaqI	GGGAC	2 cut(s)	91, 233
FatI	CATG	2 cut(s)	67, 237
Fnu4HI	GCNGC	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	36, 200
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	117, 210, 269
HapII	CCGG	3 cut(s)	114, 183, 344
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	71, 241
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	3 cut(s)	114, 183, 344
HphI	GGTGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	165, 218, 226
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	71, 241
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	3 cut(s)	127, 196, 233
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	36, 200
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	146, 248, 316
MfeI	CAATTG	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	74, 204, 262, 276
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	221, 233
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	3 cut(s)	114, 183, 344
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	3 cut(s)	144, 227, 245
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	71, 241
NlaIV	GGNNCC	1 cut(s)	221
NruI	TCGCGA	1 cut(s)	227
NspI	RCATGY	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 331
PctI	GAATGC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	220, 267
PspPPI	RGGWCCY	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	340
RruI	TCGCGA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	220, 267
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	41, 92, 225, 342
SfaNI	GCATC	1 cut(s)	15
SinI	GGWCC	1 cut(s)	220
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	4 cut(s)	74, 204, 262, 276
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	36, 200
StyD4I	CCNGG	1 cut(s)	182
TaqI	TCGA	6 cut(s)	48, 78, 98, 164, 252, 325
TasI	AATT	4 cut(s)	74, 204, 262, 276
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	2 cut(s)	36, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.