RLG00000016197

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003702
Physical Location & Seq
Reverse (-)
4672210 .. 4680813
8604 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016197

Sequence Viewer

Length: 1116 bp
ATGAAGAAGCAGGAGTTAAGGATCAAGAGACGGGTTAAAAGAGACGACGATTATGATACGAACAAGGAGAGGGCGAGCAATTACTTGAGCCAATTGTTGGAGCTTGTTGACTATGTTCGTTTCGCCGCTGTTTTACCTTCCAATGAATATTTTTGTGGCTCTAGCCAAGGTTGGTTGGCCTCGGCACACAAATCTATCAAGGAATGGCAAGAAAAACGAAAATTGAAGGTCATCCATGAAATAACTCTGCGGAACCCTTTCGGAAAAGCATCAGAGGCTATTTATCTTCCTCCGTATATGCATTGCATCCCAATATTTTACCATCATGTTAAAGAATGGATCCCAAGAGTTATCTTGTCCGCTAACCCTGCTTTGCATCCGGAAAACTATTATGTGCTCTTAGCACTCTATAGACCATTGCCGAACCACATACCACGAGTAGGTTCTGATTATTCTCCGCCGTTAGCACTTATTAAAGGAGGACAAGAATCGTGGATCACGATCAACCGACTGCCTGCAGCTCTTCCCGATGATGCTATATTTTATAAAAACAAAGTCTACTTGCTTCTTGAACGGAGATATTATAATATGATCGTGTTCAACGAGGAAGACGAATCCAATTACGAAGGCACTTCCACCGCTCAGCTGGTTGAGGTTAATTGCATTGGAGATGATGCAATATTCTTAGGTCAAAGTCAATCCCAGTCTGTTTTAGCTTCAAGTATTCCGGGCTGCAAGCCGAATTGCGTGCACTATGCCACAGAAAGCGTTAGACGGGTGGTGTCAAGCCTACGCCAGAAATCAGTGAACCTCCGAGAAAAAGCCCCGCACCACCACGTATCCGAGAAGAAAATCGAACCCAAAGCCTTGATCCACCACCCTCACCTCCACAACCTTAAGCCGCAGCGATCGGAGCCCATCACCACTAGATCGAAACACACCTCACCCTTGAAAGCTTCAGCAGAAAGCCTCAATGAATCGGAGCCGCACCACCTCGAAATGGGCCTTCAAAACAATCCCCAGAATCCGACGTCGCCAAGAAAGGATCTGCTCCGTATTCTCGCCGTCGCCCTGGTCTGGACACAGCACGGTCGCTGCCGCTACACGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

372

Amino Acids

42.67

Weight (kDa)

9.28

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 47 - 205 1.7e-11 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 214 - 253 1.4e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 546, 585
AatII GACGTC 1 cut(s) 1034
AccB7I CCANNNNNTGG 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 641
AccI GTMKAC 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 9 cut(s) 126, 250, 360, 458, 639, 827, 902, 986, 1099
AclWI GGATC 6 cut(s) 29, 334, 347, 503, 865, 1053
AcuI CTGAAG 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 1031
AfiI CCNNNNNNNGG 4 cut(s) 97, 440, 1000, 1077
AflII CTTAAG 1 cut(s) 896
AgsI TTSAA 6 cut(s) 226, 572, 601, 720, 952, 1010
AjnI CCWGG 1 cut(s) 1071
AluBI AGCT 5 cut(s) 103, 521, 646, 716, 956
AluI AGCT 5 cut(s) 103, 521, 646, 716, 956
Alw21I GWGCWC 2 cut(s) 399, 753
Alw26I GTCTC 2 cut(s) 22, 36
Alw44I GTGCAC 1 cut(s) 749
AlwI GGATC 6 cut(s) 29, 334, 347, 503, 865, 1053
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 2 cut(s) 177, 1003
ApaLI GTGCAC 1 cut(s) 749
ApeKI GCWGC 4 cut(s) 518, 732, 904, 1095
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 1003
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 875, 913, 936
BaeGI GKGCMC 1 cut(s) 753
BamHI GGATCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 918
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 399, 753
BbvI GCAGC 4 cut(s) 530, 719, 916, 1082
BccI CCATC 2 cut(s) 330, 926
BceAI ACGGC 2 cut(s) 445, 1049
BcgI CGANNNNNNTGC 2 cut(s) 730, 764
BciT130I CCWGG 1 cut(s) 1073
BciVI GTATCC 1 cut(s) 850
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 22, 36
BfaI CTAG 3 cut(s) 162, 927, 1114
BfmI CTRYAG 2 cut(s) 409, 516
BfrI CTTAAG 1 cut(s) 896
BfuI GTATCC 1 cut(s) 850
BisI GCNGC 8 cut(s) 126, 519, 733, 902, 905, 986, 1096, 1099
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 8 cut(s) 127, 520, 734, 903, 906, 987, 1097, 1100
Bme1390I CCNGG 2 cut(s) 729, 1073
BmgT120I GGNCC 1 cut(s) 1003
BmiI GGNNCC 4 cut(s) 254, 341, 915, 984
BmrFI CCNGG 2 cut(s) 729, 1073
BmrI ACTGGG 1 cut(s) 697
BmsI GCATC 5 cut(s) 278, 315, 385, 523, 664
BmuI ACTGGG 1 cut(s) 697
BpiI GAAGAC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 1031
BsaJI CCNNGG 3 cut(s) 166, 180, 1071
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 440, 1000, 1077
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 2 cut(s) 301, 416
Bse8I GATNNNNATC 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 1 cut(s) 1073
BseDI CCNNGG 3 cut(s) 166, 180, 1071
BseGI GGATG 3 cut(s) 231, 306, 376
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 4 cut(s) 97, 440, 1000, 1077
BseMI GCAATG 2 cut(s) 301, 416
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 703
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 4 cut(s) 530, 719, 916, 1082
Bsh1285I CGRYCG 2 cut(s) 911, 1093
BshFI GGCC 2 cut(s) 179, 1005
BsiEI CGRYCG 2 cut(s) 911, 1093
BsiHKAI GWGCWC 2 cut(s) 399, 753
BsiSI CCGG 2 cut(s) 380, 728
BslI CCNNNNNNNGG 4 cut(s) 97, 440, 1000, 1077
BsmAI GTCTC 2 cut(s) 22, 36
BsmBI CGTCTC 2 cut(s) 22, 36
BsnI GGCC 2 cut(s) 179, 1005
Bsp1286I GDGCHC 3 cut(s) 399, 753, 918
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 9 cut(s) 126, 250, 360, 458, 639, 827, 902, 986, 1099
BspANI GGCC 2 cut(s) 179, 1005
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 254, 341, 915, 984
BspMAI CTGCAG 1 cut(s) 520
BspPI GGATC 6 cut(s) 29, 334, 347, 503, 865, 1053
BspQI GCTCTTC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 896
BsrBI CCGCTC 1 cut(s) 641
BsrDI GCAATG 2 cut(s) 301, 416
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 3 cut(s) 166, 180, 1071
BssMI GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
BssNI GRCGYC 1 cut(s) 1031
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 1073
Bst4CI ACNGT 1 cut(s) 1091
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 1 cut(s) 1031
BstAFI CTTAAG 1 cut(s) 896
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 4 cut(s) 76, 516, 737, 749
BstDEI CTNAG 3 cut(s) 400, 642, 685
BstF5I GGATG 3 cut(s) 231, 306, 376
BstKTI GATC 9 cut(s) 24, 342, 498, 504, 594, 873, 911, 932, 1048
BstMAI GTCTC 2 cut(s) 22, 36
BstMBI GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
BstMCI CGRYCG 2 cut(s) 911, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 275, 368, 913
BstNI CCWGG 1 cut(s) 1073
BstSCI CCNGG 2 cut(s) 727, 1071
BstSFI CTRYAG 2 cut(s) 409, 516
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 4 cut(s) 530, 719, 916, 1082
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 2 cut(s) 339, 1045
BstYI RGATCY 2 cut(s) 339, 1045
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 2 cut(s) 179, 1005
BtsCI GGATG 3 cut(s) 231, 306, 376
BtsIMutI CAGTG 1 cut(s) 810
Cac8I GCNNGC 4 cut(s) 76, 516, 737, 749
Cfr13I GGNCC 1 cut(s) 1003
CspCI CAANNNNNGTGG 2 cut(s) 473, 508
CviAII CATG 2 cut(s) 236, 326
DdeI CTNAG 3 cut(s) 400, 642, 685
DpnI GATC 9 cut(s) 23, 341, 497, 503, 593, 872, 910, 931, 1047
DpnII GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 1071
EcoT14I CCWWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 2 cut(s) 22, 36
FaeI CATG 2 cut(s) 239, 329
FatI CATG 2 cut(s) 235, 325
FauI CCCGC 1 cut(s) 834
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 126, 519, 733, 902, 905, 986, 1096, 1099
FokI GGATG 3 cut(s) 218, 293, 363
FriOI GRGCYC 1 cut(s) 918
Fsp4HI GCNGC 8 cut(s) 126, 519, 733, 902, 905, 986, 1096, 1099
FspBI CTAG 3 cut(s) 162, 927, 1114
GluI GCNGC 8 cut(s) 126, 519, 733, 902, 905, 986, 1096, 1099
HaeIII GGCC 2 cut(s) 179, 1005
HapII CCGG 2 cut(s) 380, 728
Hin1I GRCGYC 1 cut(s) 1031
Hin1II CATG 2 cut(s) 239, 329
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 954
HinfI GANTC 4 cut(s) 488, 614, 977, 1024
HpaII CCGG 2 cut(s) 380, 728
HphI GGTGA 3 cut(s) 875, 913, 936
Hpy166II GTNNAC 4 cut(s) 109, 559, 751, 808
Hpy188I TCNGA 8 cut(s) 263, 274, 448, 815, 844, 913, 982, 1029
Hpy188III TCNNGA 6 cut(s) 25, 380, 499, 527, 569, 1078
Hpy8I GTNNAC 4 cut(s) 109, 559, 751, 808
Hpy99I CGWCG 4 cut(s) 50, 1033, 1036, 1070
HpyAV CCTTC 4 cut(s) 147, 220, 620, 1016
HpyCH4III ACNGT 1 cut(s) 1091
HpyCH4IV ACGT 2 cut(s) 837, 1031
HpyCH4V TGCA 8 cut(s) 301, 306, 376, 518, 663, 677, 735, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 368, 913
HpyF3I CTNAG 3 cut(s) 400, 642, 685
HpySE526I ACGT 2 cut(s) 837, 1031
Hsp92I GRCGYC 1 cut(s) 1031
Hsp92II CATG 2 cut(s) 239, 329
Kpn2I TCCGGA 1 cut(s) 379
Kzo9I GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 4 cut(s) 100, 913, 982, 1056
Lsp1109I GCAGC 4 cut(s) 530, 719, 916, 1082
LweI GCATC 5 cut(s) 278, 315, 385, 523, 664
MaeI CTAG 3 cut(s) 162, 927, 1114
MaeII ACGT 2 cut(s) 837, 1031
MalI GATC 9 cut(s) 23, 341, 497, 503, 593, 872, 910, 931, 1047
MbiI CCGCTC 1 cut(s) 641
MboI GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
MboII GAAGA 5 cut(s) 16, 278, 515, 620, 859
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 2 cut(s) 339, 1045
MhlI GDGCHC 3 cut(s) 399, 753, 918
MluCI AATT 6 cut(s) 79, 92, 221, 619, 658, 742
MmeI TCCRAC 2 cut(s) 78, 1052
Mph1103I ATGCAT 1 cut(s) 303
MroI TCCGGA 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 6 cut(s) 17, 36, 330, 474, 657, 897
MspA1I CMGCKG 2 cut(s) 128, 646
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 2 cut(s) 380, 728
MspR9I CCNGG 2 cut(s) 729, 1073
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 1073
MwoI GCNNNNNNNGC 3 cut(s) 275, 368, 913
NciI CCSGG 1 cut(s) 729
NdeII GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
NlaIII CATG 2 cut(s) 239, 329
NlaIV GGNNCC 4 cut(s) 254, 341, 915, 984
NmeAIII GCCGAG 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 528
PcsI WCGNNNNNNNCGW 3 cut(s) 497, 600, 609
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 488, 614, 977, 1024
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 8 cut(s) 127, 520, 734, 903, 906, 987, 1097, 1100
Ple19I CGATCG 1 cut(s) 911
Ppu21I YACGTR 1 cut(s) 838
PsiI TTATAA 2 cut(s) 546, 585
Psp6I CCWGG 1 cut(s) 1071
PspGI CCWGG 1 cut(s) 1071
PspN4I GGNNCC 4 cut(s) 254, 341, 915, 984
PspPI GGNCC 1 cut(s) 1003
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 2 cut(s) 339, 1045
PvuI CGATCG 1 cut(s) 911
PvuII CAGCTG 1 cut(s) 646
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 6 cut(s) 17, 36, 330, 474, 657, 897
SatI GCNGC 8 cut(s) 126, 519, 733, 902, 905, 986, 1096, 1099
Sau3AI GATC 9 cut(s) 21, 339, 495, 501, 591, 870, 908, 929, 1045
Sau96I GGNCC 1 cut(s) 1003
ScrFI CCNGG 2 cut(s) 729, 1073
SduI GDGCHC 3 cut(s) 399, 753, 918
SfaNI GCATC 5 cut(s) 278, 315, 385, 523, 664
SfcI CTRYAG 2 cut(s) 409, 516
SmlI CTYRAG 2 cut(s) 85, 896
SmoI CTYRAG 2 cut(s) 85, 896
Sse9I AATT 6 cut(s) 79, 92, 221, 619, 658, 742
SsiI CCGC 9 cut(s) 126, 250, 360, 458, 639, 827, 902, 986, 1099
SspI AATATT 3 cut(s) 149, 315, 681
SspMI CTAG 3 cut(s) 162, 927, 1114
StyD4I CCNGG 2 cut(s) 727, 1071
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 1091
TaiI ACGT 2 cut(s) 840, 1034
TaqI TCGA 3 cut(s) 855, 932, 996
TasI AATT 6 cut(s) 79, 92, 221, 619, 658, 742
TauI GCSGC 4 cut(s) 128, 904, 988, 1101
TfiI GAWTC 4 cut(s) 488, 614, 977, 1024
Tru1I TTAA 6 cut(s) 17, 36, 330, 474, 657, 897
Tru9I TTAA 6 cut(s) 17, 36, 330, 474, 657, 897
TscAI CASTG 1 cut(s) 810
TseI GCWGC 4 cut(s) 518, 732, 904, 1095
TspDTI ATGAA 4 cut(s) 17, 159, 252, 990
TspGWI ACGGA 3 cut(s) 282, 589, 1043
TspRI CASTG 1 cut(s) 810
Van91I CCANNNNNTGG 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 896
VneI GTGCAC 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 3 cut(s) 162, 927, 1114
ZraI GACGTC 1 cut(s) 1032
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.