Rh1BG027800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003702
Physical Location & Seq
Forward (+)
3867796 .. 3868200
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG027800.1

Sequence Viewer

Length: 405 bp
ATGGTAAAATCTTTTGGTTTGCAGCCAGTACCGGCTGTTTGCGGGATTATTGTGTCAAGGGAATGGTACCACAGGATTACTCATGAGACTTTTCTCAACAAAGTAATGGTCAATTCACAGATTTATGTATTGTTTCTACAAACTGTGAAGCGAATTACCATTAAGTTTGAAGGGGGTGATGCTGTTCTTGAAGATGGTTACTTCGAAGAGAGGATGAAATTCAAGAGTCTCATTAGGTCGGCCGGAAACCTGATATGTGCATCTGCAGAAGATGAATGGACTATACTGATCATCAATCCCAGGACTCACTCATGTAAGAAGATAAGAGAATATCATAGTGGAGACTTCGAGGATGCGCGACATCCCTTTGGTTTTGGCTACAGCGAAGCTGAAAAGGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.5

Weight (kDa)

6.59

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 66
AccII CGCG 1 cut(s) 358
AciI CCGC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 2 cut(s) 30, 68
AgsI TTSAA 3 cut(s) 170, 191, 223
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 80, 233, 336
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
Asp718I GGTACC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 188
AsuII TTCGAA 1 cut(s) 204
BanI GGYRCC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 301
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 80, 233, 336
BfmI CTRYAG 2 cut(s) 264, 379
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 169, 269, 343
Bpu14I TTCGAA 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 3 cut(s) 219, 358, 361
BseNI ACTGG 1 cut(s) 26
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 32, 243
BsmAI GTCTC 3 cut(s) 80, 233, 336
BsnI GGCC 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 242
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 204
BstF5I GGATG 3 cut(s) 219, 358, 361
BstFNI CGCG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 3 cut(s) 80, 233, 336
BstMBI GATC 1 cut(s) 288
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 2 cut(s) 264, 379
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 34
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 219, 358, 361
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 31
Csp6I GTAC 2 cut(s) 29, 67
CviAII CATG 2 cut(s) 83, 312
CviJI RGCY 5 cut(s) 25, 35, 242, 378, 389
CviKI_1 RGCY 5 cut(s) 25, 35, 242, 378, 389
CviQI GTAC 2 cut(s) 29, 67
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 240
Eco52I CGGCCG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 299
FaeI CATG 2 cut(s) 86, 315
FaiI YATR 6 cut(s) 84, 126, 256, 284, 313, 336
FatI CATG 2 cut(s) 82, 311
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 3 cut(s) 226, 348, 365
Fsp4HI GCNGC 1 cut(s) 23
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 32, 243
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 86, 315
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 2 cut(s) 226, 304
HpaII CCGG 2 cut(s) 32, 243
HphI GGTGA 1 cut(s) 188
Hpy188III TCNNGA 3 cut(s) 83, 188, 223
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 22, 260, 266
Hsp92II CATG 2 cut(s) 86, 315
HspAI GCGC 1 cut(s) 356
KpnI GGTACC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 7 cut(s) 39, 45, 58, 256, 263, 286, 313
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 3 cut(s) 169, 269, 343
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 4 cut(s) 203, 218, 281, 331
MluCI AATT 3 cut(s) 112, 153, 218
MlyI GAGTC 2 cut(s) 235, 298
MnlI CCTC 2 cut(s) 204, 343
MseI TTAA 1 cut(s) 162
MspI CCGG 2 cut(s) 32, 243
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 358
NdeII GATC 1 cut(s) 288
NlaIII CATG 2 cut(s) 86, 315
NlaIV GGNNCC 1 cut(s) 68
NspV TTCGAA 1 cut(s) 204
PagI TCATGA 1 cut(s) 82
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 2 cut(s) 234, 298
PpsI GAGTC 2 cut(s) 234, 298
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 2 cut(s) 30, 68
RsaNI GTAC 2 cut(s) 29, 67
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 288
SchI GAGTC 2 cut(s) 235, 298
ScrFI CCNGG 1 cut(s) 301
SetI ASST 3 cut(s) 239, 252, 391
SfaNI GCATC 3 cut(s) 169, 269, 343
SfcI CTRYAG 2 cut(s) 264, 379
SfuI TTCGAA 1 cut(s) 204
Sse9I AATT 3 cut(s) 112, 153, 218
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 204, 348
TasI AATT 3 cut(s) 112, 153, 218
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 230, 288
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.