Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Reverse (-)

62747568 .. 62752510

Gene Structure 4943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCCAACTCACAGATTTATGTACTGTTTCTACAAAATGCGAAGCGAATTACCATTAAGTTTGAAGGGGGTGATGTAGTTCTTGAAGATGGTTACTTAGAAGAGAGGATGAAATTCAAGAGTGTCATTAGGTCAGCCAGAAACCTGATATGTGCTTCTGCAGAAGATGAATGGACTATTCTGATCATTAATCCCAGGACTCACTCATGTAAGAAGATAAGAGAATATCATAGTGGAGACTTAGAGGATGCACGACATCCCTTTTGTTTTGGCTACAACAAAGCTGAAAAGGAGCATCAATTTCCGTATAACCAAGATTTCTCTCTCAATTTGGATCTCTGCCGTGAATCTGACTCTCAGCTCTCCCATATCAATATCGTTGATGAACAGGAAACTGAAGCATCTGAGAAGCATAGATATCAACTCCAACTTGAGGAGGCCATTAGTAACAATGGCAACAAAACTTGCGCATTCTTAGCTTACAAGTTTAAAAATGGTGCTTCACCTTCTGAAGGCCATCCTACAGTTAACCTAAAGCACAAACCTACTAAAGATGTCCACAAACATCCAGACACATCAAAACCAGCGTTTGAACTGACGCTGAAGCTTCAGCCTTTGGTGTCGAGGTCCATCACTGGGGGGAGTTGCCATCGGAGGCTTGATCGTGGATACCAAGTGTTGGAGTTTTGGCCTTTGTTTGGATTTGGCGATACTTCAGTTTTAATTTTGCTAGGATTAGTAGAAGATCTGATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGAAGCTACTGCTCCTGGGGCGTTGTTTCAGCAAGTTGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTCGAAGGTAAAAGTTATATCTATTGAATTTTCATATCAGAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

302

Amino Acids

34.4

Weight (kDa)

6.01

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	679
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	113, 887
AcuI	CTGAAG	6 cut(s)	417, 531, 593, 623, 699, 810
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	5 cut(s)	433, 512, 636, 679, 698
AgsI	TTSAA	5 cut(s)	65, 86, 118, 593, 887
AjnI	CCWGG	2 cut(s)	194, 802
AluBI	AGCT	6 cut(s)	284, 361, 479, 607, 794, 844
AluI	AGCT	6 cut(s)	284, 361, 479, 607, 794, 844
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	3 cut(s)	438, 514, 689
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	113, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	83, 495, 776
AsuII	TTCGAA	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	627
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	5 cut(s)	83, 525, 638, 657, 858
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	2 cut(s)	196, 804
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	2 cut(s)	159, 522
BfuI	GTATCC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	196, 804
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	627
BmrFI	CCNGG	2 cut(s)	196, 804
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	238, 304, 410
BmuI	ACTGGG	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	194, 803
Bsc4I	CCNNNNNNNGG	5 cut(s)	433, 512, 636, 679, 698
Bse1I	ACTGG	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	196, 804
BseDI	CCNNGG	2 cut(s)	194, 803
BseGI	GGATG	6 cut(s)	114, 253, 256, 517, 565, 850
BseLI	CCNNNNNNNGG	5 cut(s)	433, 512, 636, 679, 698
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	371, 396
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	3 cut(s)	440, 516, 691
BslI	CCNNNNNNNGG	5 cut(s)	433, 512, 636, 679, 698
BsmAI	GTCTC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	440, 516, 691
Bsp119I	TTCGAA	1 cut(s)	863
Bsp143I	GATC	4 cut(s)	183, 334, 661, 745
BspANI	GGCC	3 cut(s)	440, 516, 691
BspCNI	CTCAG	2 cut(s)	370, 397
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	194, 803
BssMI	GATC	4 cut(s)	183, 334, 661, 745
Bst2UI	CCWGG	2 cut(s)	196, 804
Bst4CI	ACNGT	2 cut(s)	27, 526
Bst6I	CTCTTC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	863
BstDEI	CTNAG	5 cut(s)	97, 241, 357, 405, 475
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	6 cut(s)	114, 253, 256, 517, 565, 850
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	4 cut(s)	186, 337, 664, 748
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	4 cut(s)	183, 334, 661, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 785, 791, 806
BstNI	CCWGG	2 cut(s)	196, 804
BstSCI	CCNGG	2 cut(s)	194, 802
BstSFI	CTRYAG	2 cut(s)	159, 522
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	2 cut(s)	334, 745
BstYI	RGATCY	2 cut(s)	334, 745
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	3 cut(s)	440, 516, 691
BtsCI	GGATG	6 cut(s)	114, 253, 256, 517, 565, 850
BtsIMutI	CAGTG	1 cut(s)	633
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	207
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	5 cut(s)	97, 241, 357, 405, 475
DpnI	GATC	4 cut(s)	185, 336, 663, 747
DpnII	GATC	4 cut(s)	183, 334, 661, 745
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	627
Eco57I	CTGAAG	6 cut(s)	417, 531, 593, 623, 699, 810
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	194, 802
EcoRV	GATATC	1 cut(s)	419
FaeI	CATG	1 cut(s)	210
FatI	CATG	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	6 cut(s)	121, 243, 260, 504, 552, 837
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	1 cut(s)	731
FspI	TGCGCA	1 cut(s)	469
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	440, 516, 691
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	2 cut(s)	605, 842
HinfI	GANTC	3 cut(s)	199, 347, 353
HpaI	GTTAAC	1 cut(s)	529
HphI	GGTGA	3 cut(s)	83, 495, 776
Hpy166II	GTNNAC	2 cut(s)	529, 559
Hpy188I	TCNGA	7 cut(s)	183, 352, 406, 511, 654, 750, 900
Hpy188III	TCNNGA	4 cut(s)	83, 118, 569, 854
Hpy8I	GTNNAC	2 cut(s)	529, 559
HpyAV	CCTTC	4 cut(s)	59, 506, 516, 859
HpyCH4III	ACNGT	2 cut(s)	27, 526
HpyCH4V	TGCA	2 cut(s)	161, 251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 785, 791, 806
HpyF3I	CTNAG	5 cut(s)	97, 241, 357, 405, 475
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	183, 334, 661, 745
LmnI	GCTCC	2 cut(s)	292, 805
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	238, 304, 410
MaeI	CTAG	1 cut(s)	731
MaeIII	GTNAC	2 cut(s)	92, 446
MalI	GATC	4 cut(s)	185, 336, 663, 747
MboI	GATC	4 cut(s)	183, 334, 661, 745
MboII	GAAGA	5 cut(s)	98, 113, 176, 226, 755
MflI	RGATCY	2 cut(s)	334, 745
MluCI	AATT	6 cut(s)	48, 113, 299, 328, 723, 887
MlyI	GAGTC	2 cut(s)	193, 347
MmeI	TCCRAC	2 cut(s)	451, 660
MnlI	CCTC	6 cut(s)	99, 238, 427, 430, 618, 648
MseI	TTAA	5 cut(s)	57, 189, 489, 528, 722
MspR9I	CCNGG	2 cut(s)	196, 804
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	2 cut(s)	196, 804
MwoI	GCNNNNNNNGC	4 cut(s)	476, 785, 791, 806
NdeII	GATC	4 cut(s)	183, 334, 661, 745
NlaIII	CATG	1 cut(s)	210
NsbI	TGCGCA	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	863
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	2 cut(s)	193, 347
PpsI	GAGTC	2 cut(s)	193, 347
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	194, 802
PspGI	CCWGG	2 cut(s)	194, 802
PspPI	GGNCC	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	334, 745
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	57, 189, 489, 528, 722
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	4 cut(s)	183, 334, 661, 745
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	2 cut(s)	193, 347
ScrFI	CCNGG	2 cut(s)	196, 804
SfaNI	GCATC	3 cut(s)	238, 304, 410
SfcI	CTRYAG	2 cut(s)	159, 522
SfuI	TTCGAA	1 cut(s)	863
SinI	GGWCC	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	6 cut(s)	48, 113, 299, 328, 723, 887
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	2 cut(s)	194, 802
TaaI	ACNGT	2 cut(s)	27, 526
TaqI	TCGA	2 cut(s)	623, 863
TasI	AATT	6 cut(s)	48, 113, 299, 328, 723, 887
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	5 cut(s)	57, 189, 489, 528, 722
Tru9I	TTAA	5 cut(s)	57, 189, 489, 528, 722
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	1 cut(s)	785
TspDTI	ATGAA	4 cut(s)	125, 183, 399, 882
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	627
VspI	ATTAAT	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	2 cut(s)	113, 887
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.