Rh6DG322500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003702
Physical Location & Seq
Forward (+)
52787464 .. 52788907
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG322500.1

Sequence Viewer

Length: 690 bp
ATGGATTCAAGCAATGGTGGTGAGGCAGTTGGAGGCATTGGGATAACTGAAAAGTCAAACATCATTGAAAAAAATGATTCCTTTGGAACCCCCAACAGCACCAAAGAGAAGGCCTTGGGTTCATGTGTGGGGAAAGAAACGTTTTTTAGGGCGGATCAGATTGATTTCAAGAGCTGGGATATCCAGCTGGAGAAGCACTTGAGTAGGGGCTGGTCCAGGGAGAAGGAAGCGCAGACGTCAATGGAGGAGTGGGAGATTGATTTGGCTAAGTTGGATATAAGATATGTGATTGCTCATGGAACATATGGAACTGTGTACAGGGGTACCTATGATAGTCAAGATGTTGCAGTGAAGATATTGGATTGGGGTGAGGATAATATTGCCACAGCTGCTGAAACTGCTGCTCTTCGGGCGTCGTTTCAGCAAGAGGTTGCTGTCTGGCATAAGCTTGACCATCCAAATATTCCCAAGTTTGTTGGAGCTTCAATGGGAACTTCAAATCTTAAAATCCCTGTCAAAGGCACATCAAGTGATGGTCAAAGTCATAATTCTCCTCCTTCCAGAGCTTGTTGTGTTGTTGTTGAGTATGTTCCTGGTGGGACACTAAAGAACTATTTGATCAGGAATAGTAGAAAGAAACTTGCCTTTAAGATTGTGGTTCAACTTGCTTTGGATTTGTCTAAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.13

Weight (kDa)

6.53

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 94 - 229 1.1e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 97 - 210 6.6e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 239
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 1 cut(s) 152
AclI AACGTT 1 cut(s) 140
AclWI GGATC 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 236, 413
AfaI GTAC 2 cut(s) 317, 325
AfiI CCNNNNNNNGG 1 cut(s) 518
AgsI TTSAA 6 cut(s) 9, 68, 169, 486, 498, 662
AjnI CCWGG 2 cut(s) 215, 592
AluBI AGCT 6 cut(s) 174, 187, 389, 448, 482, 566
AluI AGCT 6 cut(s) 174, 187, 389, 448, 482, 566
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 389, 401
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 32, 380
AvaII GGWCC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 376, 388
BccI CCATC 2 cut(s) 462, 527
BciT130I CCWGG 2 cut(s) 217, 594
BclI TGATCA 1 cut(s) 618
BisI GCNGC 2 cut(s) 390, 402
BlsI GCNGC 2 cut(s) 391, 403
Bme1390I CCNGG 2 cut(s) 217, 594
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 88, 325
BmrFI CCNGG 2 cut(s) 217, 594
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 220
BsaHI GRCGYC 2 cut(s) 236, 413
BsaJI CCNNGG 2 cut(s) 114, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 217, 594
BseDI CCNNGG 2 cut(s) 114, 216
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 1 cut(s) 19
BseRI GAGGAG 2 cut(s) 260, 543
BseXI GCAGC 2 cut(s) 376, 388
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 323
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 154, 618
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 88, 325
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 114, 216
BssMI GATC 2 cut(s) 154, 618
BssNI GRCGYC 2 cut(s) 236, 413
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 217, 594
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 236, 413
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 157, 621
BstMBI GATC 2 cut(s) 154, 618
BstMWI GCNNNNNNNGC 4 cut(s) 193, 389, 398, 410
BstNI CCWGG 2 cut(s) 217, 594
BstSCI CCNGG 2 cut(s) 215, 592
BstV1I GCAGC 2 cut(s) 376, 388
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 316, 324
CviAII CATG 2 cut(s) 123, 296
CviJI RGCY 9 cut(s) 113, 174, 187, 210, 266, 389, 448, 482, 566
CviKI_1 RGCY 9 cut(s) 113, 174, 187, 210, 266, 389, 448, 482, 566
CviQI GTAC 2 cut(s) 316, 324
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 156, 620
DpnII GATC 2 cut(s) 154, 618
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 113
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 215, 592
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 126, 299
FaqI GGGAC 1 cut(s) 613
FatI CATG 2 cut(s) 122, 295
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 390, 402
FokI GGATG 1 cut(s) 441
Fsp4HI GCNGC 2 cut(s) 390, 402
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 390, 402
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 113
HgaI GACGC 1 cut(s) 402
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 2 cut(s) 236, 413
Hin1II CATG 2 cut(s) 126, 299
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 5, 77
HphI GGTGA 2 cut(s) 32, 380
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 4 cut(s) 169, 338, 561, 622
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 103, 217, 567
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 140, 236
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 389, 398, 410
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 140, 236
Hsp92I GRCGYC 2 cut(s) 236, 413
Hsp92II CATG 2 cut(s) 126, 299
HspAI GCGC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 2 cut(s) 154, 618
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 479
Lsp1109I GCAGC 2 cut(s) 376, 388
MaeII ACGT 2 cut(s) 140, 236
MalI GATC 2 cut(s) 156, 620
MboI GATC 2 cut(s) 154, 618
MboII GAAGA 2 cut(s) 364, 398
MluCI AATT 1 cut(s) 547
MmeI TCCRAC 3 cut(s) 10, 252, 457
MnlI CCTC 6 cut(s) 16, 26, 238, 364, 421, 564
MseI TTAA 2 cut(s) 504, 648
MspA1I CMGCKG 2 cut(s) 187, 389
MspR9I CCNGG 2 cut(s) 217, 594
MvaI CCWGG 2 cut(s) 217, 594
MwoI GCNNNNNNNGC 4 cut(s) 193, 389, 398, 410
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 154, 618
NlaIII CATG 2 cut(s) 126, 299
NlaIV GGNNCC 2 cut(s) 88, 325
PceI AGGCCT 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 5, 77
PkrI GCNGC 2 cut(s) 391, 403
Psp1406I AACGTT 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 215, 592
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 215, 592
PspN4I GGNNCC 2 cut(s) 88, 325
PspPI GGNCC 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 2 cut(s) 187, 389
RsaI GTAC 2 cut(s) 317, 325
RsaNI GTAC 2 cut(s) 316, 324
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 504, 648
SatI GCNGC 2 cut(s) 390, 402
Sau3AI GATC 2 cut(s) 154, 618
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 217, 594
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 1 cut(s) 547
SseBI AGGCCT 1 cut(s) 113
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 379, 463
StuI AGGCCT 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 215, 592
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 2 cut(s) 143, 239
TasI AATT 1 cut(s) 547
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 5, 77
Tru1I TTAA 2 cut(s) 504, 648
Tru9I TTAA 2 cut(s) 504, 648
TscAI CASTG 1 cut(s) 354
TseI GCWGC 2 cut(s) 389, 401
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 516
ZraI GACGTC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.