RLG00000020807

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003702
Physical Location & Seq
Reverse (-)
69044701 .. 69045323
623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020807

Sequence Viewer

Length: 444 bp
ATGAGGCGGGATGTTAAACTAGAAACCAAAGTCAACAGAAAATTTACAACGGCAAAGTCGGGTTGTTTTATAGGAGTGAAATTTGCTAACAACATAAACTCAGTTGCAGCTGCCACATTTTGGATTCGTGCACGAGATCAAAGATTGTGTATGAAGAAGAGGAAGAAGAAGAAGACGACCACTTCGAGTTCGGGTCTTTTCAAAAATCCGCCGATGAGGTTTTCTTCTGCGACAACGCCCGGATGGGTCCGGTTTTTCCAGGTCTTCAACCGCAACCGTATAAGTCAACGGGATCTAAACGACACCGATGACGCCATGCCGATGTTGTCGTTGTCCACGTCCGCCGGTTTCGTCTCCTTCCCATTGCAATTTGCAAGAATATGCAAGAATATCAAGTCGACTGGAGAAGAAGATAAACCAAACTCATCTCCTGGGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.61

Weight (kDa)

10.86

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AccI GTMKAC 1 cut(s) 398
AciI CCGC 4 cut(s) 7, 209, 271, 342
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 2 cut(s) 41, 80
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 2 cut(s) 202, 268
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 2 cut(s) 258, 430
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 129
AlwI GGATC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 2 cut(s) 41, 80
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 133
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 179, 256
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 97, 119
BccI CCATC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 260, 432
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 3 cut(s) 240, 260, 432
Bme18I GGWCC 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 3 cut(s) 240, 260, 432
BpiI GAAGAC 2 cut(s) 179, 256
BpmI CTGGAG 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 431
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 406
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 2 cut(s) 260, 432
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 2 cut(s) 16, 248
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 2 cut(s) 97, 119
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 240, 250, 345
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 136, 292
BspACI CCGC 4 cut(s) 7, 209, 271, 342
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 136, 292
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 260, 432
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 16, 248
BstKTI GATC 2 cut(s) 139, 295
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 136, 292
BstNI CCWGG 2 cut(s) 260, 432
BstSCI CCNGG 3 cut(s) 238, 258, 430
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 97, 119
BstV2I GAAGAC 2 cut(s) 179, 256
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 16, 248
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 320
CviAII CATG 1 cut(s) 316
CviJI RGCY 1 cut(s) 110
CviKI_1 RGCY 1 cut(s) 110
DdeI CTNAG 1 cut(s) 100
DpnI GATC 2 cut(s) 138, 294
DpnII GATC 2 cut(s) 136, 292
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 2 cut(s) 198, 331
Eco47I GGWCC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 258, 430
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 1 cut(s) 319
FaiI YATR 6 cut(s) 71, 95, 152, 281, 317, 382
FatI CATG 1 cut(s) 315
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 108, 111
FokI GGATG 2 cut(s) 23, 255
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 1 cut(s) 20
GluI GCNGC 2 cut(s) 108, 111
GsuI CTGGAG 1 cut(s) 423
HapII CCGG 3 cut(s) 240, 250, 345
HgaI GACGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 3 cut(s) 34, 287, 399
HindII GTYRAC 3 cut(s) 34, 287, 399
HinfI GANTC 1 cut(s) 124
HpaII CCGG 3 cut(s) 240, 250, 345
Hpy166II GTNNAC 5 cut(s) 34, 131, 287, 336, 399
Hpy8I GTNNAC 5 cut(s) 34, 131, 287, 336, 399
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 5 cut(s) 107, 131, 367, 374, 384
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 136, 292
LpnPI CCDG 7 cut(s) 245, 253, 263, 272, 358, 387, 417
Lsp1109I GCAGC 2 cut(s) 97, 119
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 138, 294
MboI GATC 2 cut(s) 136, 292
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 41, 80, 368
MnlI CCTC 2 cut(s) 153, 210
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 3 cut(s) 240, 250, 345
MspR9I CCNGG 3 cut(s) 240, 260, 432
MvaI CCWGG 2 cut(s) 260, 432
NciI CCSGG 1 cut(s) 240
NdeII GATC 2 cut(s) 136, 292
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 182, 335
PfeI GAWTC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 109, 112
Psp6I CCWGG 2 cut(s) 258, 430
PspGI CCWGG 2 cut(s) 258, 430
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 320
SalI GTCGAC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 108, 111
Sau3AI GATC 2 cut(s) 136, 292
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 240, 260, 432
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 112, 221, 264, 341
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 3 cut(s) 41, 80, 368
SsiI CCGC 4 cut(s) 7, 209, 271, 342
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 238, 258, 430
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 185, 398
TasI AATT 3 cut(s) 41, 80, 368
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 2 cut(s) 107, 110
TspDTI ATGAA 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 41, 80
XmiI GTMKAC 1 cut(s) 398
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.