Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Forward (+)

7989019 .. 7994387

Gene Structure 5369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGAAGAAGAAGATGACGACCTCGAGTTCGTGTCCTTTCAGAAATCGGCCAACAAGGTTTTCTTCGGCGACAACACCCGGATTGATCCGGTTTTTCTGGGTCTTCAGCCTCAACCTTATAAGTCAACGGGATCTAAACGACACCAATGACGCCGTGCCAACGTTTGAACTGAAGCTGAAGCTTCAGACTTTGGTGTCGAGGTCCATCACTGGGGGGGAAGTTGCCATCGGAGGCTTGATCGTGGATACCAAGGTGTTCTGCTGGCCTAGACAGGATTTTACTGATATCTTAGATTTTATTGGGTGTGGAACTGTTAATGCTTTAATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCGTTGTTTCAGCAAGTTGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTTTAAGAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.69

Weight (kDa)

8.91

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AasI	GACNNNNNNGTC	1 cut(s)	196
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	2 cut(s)	82, 141
AcoI	YGGCCR	1 cut(s)	50
AcuI	CTGAAG	4 cut(s)	91, 170, 194, 200
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	3 cut(s)	178, 184, 421
AluI	AGCT	3 cut(s)	178, 184, 421
AlwI	GGATC	2 cut(s)	82, 141
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	50, 266
ApeKI	GCWGC	2 cut(s)	362, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	349, 352
BccI	CCATC	3 cut(s)	215, 236, 435
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	363, 366
BlsI	GCNGC	2 cut(s)	364, 367
Bme1390I	CCNGG	2 cut(s)	81, 381
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	2 cut(s)	81, 381
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	252, 380
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	252, 380
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	349, 352
BshFI	GGCC	2 cut(s)	52, 268
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	81, 91
BslI	CCNNNNNNNGG	1 cut(s)	213
BsnI	GGCC	2 cut(s)	52, 268
BsoBI	CYCGRG	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	87, 133, 240
BspANI	GGCC	2 cut(s)	52, 268
BspPI	GGATC	2 cut(s)	82, 141
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	252, 380
BssMI	GATC	3 cut(s)	87, 133, 240
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	3 cut(s)	90, 136, 243
BstMBI	GATC	3 cut(s)	87, 133, 240
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 374, 383
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	79, 379
BstV1I	GCAGC	2 cut(s)	349, 352
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	52, 268
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	161
CviJI	RGCY	7 cut(s)	52, 111, 178, 184, 237, 268, 421
CviKI_1	RGCY	7 cut(s)	52, 111, 178, 184, 237, 268, 421
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	3 cut(s)	89, 135, 242
DpnII	GATC	3 cut(s)	87, 133, 240
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	4 cut(s)	91, 170, 194, 200
Eco88I	CYCGRG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	3 cut(s)	122, 417, 451
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
Fnu4HI	GCNGC	2 cut(s)	363, 366
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	363, 366
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	363, 366
HaeIII	GGCC	2 cut(s)	52, 268
HapII	CCGG	2 cut(s)	81, 91
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	2 cut(s)	182, 419
HpaII	CCGG	2 cut(s)	81, 91
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	44, 189, 233
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 374, 383
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	87, 133, 240
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	85, 94, 104, 198, 250, 260, 366, 393, 444
Lsp1109I	GCAGC	2 cut(s)	349, 352
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	164
MalI	GATC	3 cut(s)	89, 135, 242
MboI	GATC	3 cut(s)	87, 133, 240
MboII	GAAGA	6 cut(s)	16, 19, 22, 25, 57, 97
MflI	RGATCY	1 cut(s)	133
MnlI	CCTC	4 cut(s)	34, 122, 195, 227
MseI	TTAA	3 cut(s)	318, 326, 441
MspI	CCGG	2 cut(s)	81, 91
MspR9I	CCNGG	2 cut(s)	81, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	362, 374, 383
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	87, 133, 240
PaeR7I	CTCGAG	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	364, 367
PsiI	TTATAA	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	204
PspXI	VCTCGAGB	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	318, 326, 441
SatI	GCNGC	2 cut(s)	363, 366
Sau3AI	GATC	3 cut(s)	87, 133, 240
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	81, 381
SetI	ASST	9 cut(s)	26, 62, 120, 167, 180, 186, 206, 258, 423
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SspI	AATATT	2 cut(s)	330, 352
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	79, 379
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	26, 200
Tru1I	TTAA	3 cut(s)	318, 326, 441
Tru9I	TTAA	3 cut(s)	318, 326, 441
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	362, 365
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	25
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.