Rh1BG040000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003702
Physical Location & Seq
Reverse (-)
5251284 .. 5254804
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG040000.1

Sequence Viewer

Length: 1290 bp
ATGCTGTTGCTCCCTCCTGTTGAACTCCAAGGAACGGATAGTGAAAGCAGCAGCGAGCAGGAAACGAAGCAAAGACTTTTGTATAGCGTTTCGGAAGGAATAATCTACGACAAGCTTAACACTGATCGGTTATCAGTGCCTTACTATGAGAAGTTTTGTGGCTCTAGCCATGGTTGGCTGGCCTTGGCATACAAAACTGTCCACGAATGCCAAAAGGTTGTGGAGGTCACTCTTTACATAACTCTGAGAAACCCTTTCGAAAGTGCATCGGAGCCAATCCATCTTTTTCCTTACAAGCATTGCATCCCTAAAGGATACTACGAGGATCATATTGATTGGATTCCTAAGGTTACCTTGTCTGCTGATCCCAGTTTGCATCCGGACGATTATTATGTGCTCTTAGCATTCTACAGACCAATGTCGAACGACATTGGACCAGATGCACCATTATCATATTGTCCATCTTTGGCTCTCATTAAAGGAGGACAAAATTCTTGGATCATAATCAGCCGACGGGATGGAGTTTATCCCAAGTTTGATGATGCTATATTTTATAAAAATAAAGTCTACTTAATTAAGGACGGGGGTGATCTTCTAACAATCGTGGATGTTAACCTTTCCCCTCCCGTAGAAGAAGATATAATTCTTTTCCCTGGCGCAACTGACATTTTTCCTGAGGCTTGTGATGATACTGGCAAAAAGAGGAAGAAAGAGGAAGAGGAAACAGAGGAGACACCTGTCAAGAAACCAAGACCGTTGTCAGATGAGGCCATAACTGAACGGAAGGATATTCACCCTGTATTTGAAGAGGTATGGGGAAGGCTTGGAAGAAGGGATCTATCTGCGGGATTATTGGTGTCTAGGGAATGGTACCACAAGATTACTCATCATACTTTTCTCAACAGAGTAATGGCCAATTCAAAGATTTATGTGCTGTTTCTACAAACTGCAAAGCGAACTACCATTAGGTTTGAAGGGGGTGATGCAGGTCTTGAAGATGGTTCCTTAGAAGAGAAGATGAAATTCAAGAGTCTCATTGGGTCGGCCGGAAACCTGATATGTGCATCTGCAAAAGATGAATGGACTGTTCTGATTATCAATCCCCGGACTCACTCATGTAAGAAGATAAGAGAATGTCACAGTGGAGACTTAGAGGATGCGCGACATCCCTTTGGTTTTGGCTACAGCGAAGCTGAAAAGAAGCATCAGGTTGTAAGATTACACACAAGGATTTCGGAGAAAGAGCAAACCACCTATGCCAACATTTTCTCAGTCAAAGGAGCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

429

Amino Acids

48.82

Weight (kDa)

5.88

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 29 - 222 1.3e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 977
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 1 cut(s) 870
AccI GTMKAC 1 cut(s) 567
AccII CGCG 1 cut(s) 1162
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 1 cut(s) 845
AclWI GGATC 4 cut(s) 333, 359, 506, 843
AcoI YGGCCR 2 cut(s) 912, 1044
AcsI RAATTY 2 cut(s) 490, 1022
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 6 cut(s) 23, 806, 921, 974, 995, 1027
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 2 cut(s) 115, 1193
AluI AGCT 2 cut(s) 115, 1193
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 3 cut(s) 725, 1037, 1140
AlwI GGATC 4 cut(s) 333, 359, 506, 843
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 4 cut(s) 180, 768, 912, 1044
ApeKI GCWGC 2 cut(s) 48, 51
ApoI RAATTY 2 cut(s) 490, 1022
Asp718I GGTACC 1 cut(s) 870
AspLEI GCGC 2 cut(s) 659, 1162
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 3 cut(s) 599, 785, 992
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 434
AxyI CCTNAGG 2 cut(s) 345, 675
BalI TGGCCA 1 cut(s) 914
BanI GGYRCC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 60, 63
BccI CCATC 4 cut(s) 288, 469, 512, 992
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 308
BcnI CCSGG 1 cut(s) 1105
BcoDI GTCTC 3 cut(s) 725, 1037, 1140
BfaI CTAG 3 cut(s) 165, 861, 1288
BfmI CTRYAG 2 cut(s) 409, 1183
BfuAI ACCTGC 1 cut(s) 977
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 2 cut(s) 49, 52
BlsI GCNGC 2 cut(s) 50, 53
Bme1390I CCNGG 2 cut(s) 654, 1105
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 3 cut(s) 273, 872, 1003
BmrFI CCNGG 2 cut(s) 654, 1105
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 9 cut(s) 275, 312, 385, 430, 532, 973, 1073, 1147, 1213
BmuI ACTGGG 1 cut(s) 363
BoxI GACNNNNGTC 3 cut(s) 418, 737, 757
Bpu14I TTCGAA 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 1105
BsaBI GATNNNNATC 1 cut(s) 503
BsaJI CCNNGG 5 cut(s) 28, 169, 183, 652, 1103
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 369, 697
Bse21I CCTNAGG 2 cut(s) 345, 675
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 503
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 5 cut(s) 28, 169, 183, 652, 1103
BseGI GGATG 6 cut(s) 303, 376, 523, 613, 1162, 1165
BseJI GATNNNNATC 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 3 cut(s) 236, 666, 1284
BseNI ACTGG 2 cut(s) 369, 697
BseRI GAGGAG 1 cut(s) 743
BseX3I CGGCCG 1 cut(s) 1044
BseXI GCAGC 2 cut(s) 60, 63
Bsh1236I CGCG 1 cut(s) 1162
Bsh1285I CGRYCG 1 cut(s) 1047
BshFI GGCC 4 cut(s) 182, 770, 914, 1046
BshNI GGYRCC 1 cut(s) 870
BsiEI CGRYCG 1 cut(s) 1047
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 3 cut(s) 380, 1047, 1105
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 725, 1037, 1140
BsmI GAATGC 2 cut(s) 212, 404
BsnI GGCC 4 cut(s) 182, 770, 914, 1046
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 6 cut(s) 124, 325, 364, 498, 589, 835
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 845
BspANI GGCC 4 cut(s) 182, 770, 914, 1046
BspCNI CTCAG 3 cut(s) 237, 667, 1283
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 273, 872, 1003
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 4 cut(s) 333, 359, 506, 843
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 870
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 2 cut(s) 369, 697
BssECI CCNNGG 5 cut(s) 28, 169, 183, 652, 1103
BssMI GATC 6 cut(s) 124, 325, 364, 498, 589, 835
BssT1I CCWWGG 3 cut(s) 28, 169, 183
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 199, 756, 1087, 1142
Bst6I CTCTTC 3 cut(s) 711, 801, 1005
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 56, 180
BstDEI CTNAG 7 cut(s) 245, 345, 400, 675, 1006, 1150, 1270
BstDSI CCRYGG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 349
BstF5I GGATG 6 cut(s) 303, 376, 523, 613, 1162, 1165
BstFNI CGCG 1 cut(s) 1162
BstHHI GCGC 2 cut(s) 659, 1162
BstKTI GATC 6 cut(s) 127, 328, 367, 501, 592, 838
BstMAI GTCTC 3 cut(s) 725, 1037, 1140
BstMBI GATC 6 cut(s) 124, 325, 364, 498, 589, 835
BstMCI CGRYCG 1 cut(s) 1047
BstNI CCWGG 1 cut(s) 654
BstPAI GACNNNNGTC 3 cut(s) 418, 737, 757
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 652, 1103
BstSFI CTRYAG 2 cut(s) 409, 1183
BstUI CGCG 1 cut(s) 1162
BstV1I GCAGC 2 cut(s) 60, 63
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BstZI CGGCCG 1 cut(s) 1044
Bsu36I CCTNAGG 2 cut(s) 345, 675
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 4 cut(s) 182, 770, 914, 1046
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 6 cut(s) 303, 376, 523, 613, 1162, 1165
BtsIMutI CAGTG 3 cut(s) 120, 141, 1147
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 2 cut(s) 56, 180
CfoI GCGC 2 cut(s) 659, 1162
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 871
CviAII CATG 2 cut(s) 170, 1116
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 7 cut(s) 245, 345, 400, 675, 1006, 1150, 1270
DpnI GATC 6 cut(s) 126, 327, 366, 500, 591, 837
DpnII GATC 6 cut(s) 124, 325, 364, 498, 589, 835
EaeI YGGCCR 2 cut(s) 912, 1044
EagI CGGCCG 1 cut(s) 1044
Eam1104I CTCTTC 3 cut(s) 711, 801, 1005
EarI CTCTTC 3 cut(s) 711, 801, 1005
EclXI CGGCCG 1 cut(s) 1044
Eco130I CCWWGG 3 cut(s) 28, 169, 183
Eco47I GGWCC 1 cut(s) 434
Eco52I CGGCCG 1 cut(s) 1044
Eco81I CCTNAGG 2 cut(s) 345, 675
Eco91I GGTNACC 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 3 cut(s) 28, 169, 183
ErhI CCWWGG 3 cut(s) 28, 169, 183
FaeI CATG 2 cut(s) 173, 1119
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 2 cut(s) 169, 1115
FauI CCCGC 1 cut(s) 838
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 49, 52
FokI GGATG 6 cut(s) 290, 363, 530, 620, 1152, 1169
Fsp4HI GCNGC 2 cut(s) 49, 52
FspBI CTAG 3 cut(s) 165, 861, 1288
GlaI GCGC 2 cut(s) 658, 1161
GluI GCNGC 2 cut(s) 49, 52
HaeIII GGCC 4 cut(s) 182, 770, 914, 1046
HapII CCGG 3 cut(s) 380, 1047, 1105
HhaI GCGC 2 cut(s) 659, 1162
Hin1II CATG 2 cut(s) 173, 1119
Hin6I GCGC 2 cut(s) 657, 1160
HinP1I GCGC 2 cut(s) 657, 1160
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 340, 1030, 1108
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 3 cut(s) 380, 1047, 1105
HphI GGTGA 3 cut(s) 599, 785, 992
Hpy166II GTNNAC 3 cut(s) 202, 568, 613
Hpy188I TCNGA 6 cut(s) 94, 246, 271, 763, 1092, 1237
Hpy188III TCNNGA 5 cut(s) 380, 674, 742, 992, 1027
Hpy8I GTNNAC 3 cut(s) 202, 568, 613
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 5 cut(s) 89, 778, 813, 825, 968
HpyCH4III ACNGT 4 cut(s) 199, 756, 1087, 1142
HpyCH4V TGCA 8 cut(s) 266, 303, 376, 443, 950, 986, 1064, 1070
HpyF3I CTNAG 7 cut(s) 245, 345, 400, 675, 1006, 1150, 1270
Hsp92II CATG 2 cut(s) 173, 1119
HspAI GCGC 2 cut(s) 657, 1160
Kpn2I TCCGGA 1 cut(s) 379
KpnI GGTACC 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 6 cut(s) 124, 325, 364, 498, 589, 835
LmnI GCTCC 3 cut(s) 15, 271, 1280
Lsp1109I GCAGC 2 cut(s) 60, 63
LweI GCATC 9 cut(s) 275, 312, 385, 430, 532, 973, 1073, 1147, 1213
MaeI CTAG 3 cut(s) 165, 861, 1288
MaeIII GTNAC 3 cut(s) 226, 349, 1136
MalI GATC 6 cut(s) 126, 327, 366, 500, 591, 837
MboI GATC 6 cut(s) 124, 325, 364, 498, 589, 835
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 914
MluCI AATT 5 cut(s) 490, 573, 642, 916, 1022
MluNI TGGCCA 1 cut(s) 914
MlyI GAGTC 2 cut(s) 1039, 1102
Mox20I TGGCCA 1 cut(s) 914
MroI TCCGGA 1 cut(s) 379
MscI TGGCCA 1 cut(s) 914
MseI TTAA 5 cut(s) 117, 477, 572, 576, 612
Msp20I TGGCCA 1 cut(s) 914
MspI CCGG 3 cut(s) 380, 1047, 1105
MspR9I CCNGG 2 cut(s) 654, 1105
Mva1269I GAATGC 2 cut(s) 212, 404
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 1162
NciI CCSGG 1 cut(s) 1105
NcoI CCATGG 1 cut(s) 169
NdeII GATC 6 cut(s) 124, 325, 364, 498, 589, 835
NlaIII CATG 2 cut(s) 173, 1119
NlaIV GGNNCC 3 cut(s) 273, 872, 1003
NmuCI GTSAC 2 cut(s) 226, 1136
NspV TTCGAA 1 cut(s) 258
PacI TTAATTAA 1 cut(s) 576
PctI GAATGC 2 cut(s) 212, 404
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 50, 53
PleI GAGTC 2 cut(s) 1038, 1102
PpsI GAGTC 2 cut(s) 1038, 1102
PshAI GACNNNNGTC 3 cut(s) 418, 737, 757
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 652
PspEI GGTNACC 1 cut(s) 349
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 273, 872, 1003
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 1 cut(s) 835
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
SaqAI TTAA 5 cut(s) 117, 477, 572, 576, 612
SatI GCNGC 2 cut(s) 49, 52
Sau3AI GATC 6 cut(s) 124, 325, 364, 498, 589, 835
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 2 cut(s) 1039, 1102
ScrFI CCNGG 2 cut(s) 654, 1105
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 9 cut(s) 275, 312, 385, 430, 532, 973, 1073, 1147, 1213
SfcI CTRYAG 2 cut(s) 409, 1183
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 1 cut(s) 434
Sse9I AATT 5 cut(s) 490, 573, 642, 916, 1022
SsiI CCGC 1 cut(s) 845
SspMI CTAG 3 cut(s) 165, 861, 1288
StyD4I CCNGG 2 cut(s) 652, 1103
StyI CCWWGG 3 cut(s) 28, 169, 183
TaaI ACNGT 4 cut(s) 199, 756, 1087, 1142
TaqI TCGA 2 cut(s) 258, 422
TasI AATT 5 cut(s) 490, 573, 642, 916, 1022
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 5 cut(s) 117, 477, 572, 576, 612
Tru9I TTAA 5 cut(s) 117, 477, 572, 576, 612
TscAI CASTG 3 cut(s) 127, 141, 1147
TseFI GTSAC 2 cut(s) 226, 1136
TseI GCWGC 2 cut(s) 48, 51
Tsp45I GTSAC 2 cut(s) 226, 1136
TspDTI ATGAA 2 cut(s) 1034, 1092
TspGWI ACGGA 2 cut(s) 50, 796
TspRI CASTG 3 cut(s) 127, 141, 1147
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 490, 1022
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 3 cut(s) 165, 861, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.