Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Reverse (-)

69073262 .. 69075128

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAAAGTCAGTGCAAGAGACCAAAGAGTATGTGTTTGAAGAAGAAGAAGAAGAAGATGACGACTTCGAGTTCGGGTCGTTTCAGAAATCCGCCCATAAGGTTTTCTTCGGCAACAACACCCGGATAAGGTTTTTCCAAGTCTTCAACCGCAACCGTATAAGTCAACGGGATCTAAACGACGCCGATGATGCCATGCTGATGTTGTCGTTGTTCATGTCCGCCAGTTTCGTCTCCTTCCCATTGCAATTTGCAAGAATAGCAAGTCGACCGGAGAAGAAGATAAACCAAACTCATCTCCTGGGCAGGGCCGGCCCTGTGAGTTTGGAGGCTCAAGGCGAGAAAAAATTCGAGGCCCCAAAATTCAACTGCTACATGCCTTGGACAATGGCAAGTTCATTAGATGATGAAGAAGTTAAGATGAAGAAGTTGATAGCTCATAGACAAAAACCGAATTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.03

Weight (kDa)

5.72

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AciI	CCGC	3 cut(s)	93, 151, 222
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	347, 362
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	129, 307
AgsI	TTSAA	3 cut(s)	41, 148, 367
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw26I	GTCTC	2 cut(s)	14, 238
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	3 cut(s)	309, 313, 354
ApoI	RAATTY	2 cut(s)	347, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	309, 314, 355
AsuC2I	CCSGG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	14, 238
Bme1390I	CCNGG	2 cut(s)	124, 302
BmgT120I	GGNCC	3 cut(s)	309, 314, 355
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	124, 302
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	301, 380
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 307
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	301, 380
BseLI	CCNNNNNNNGG	2 cut(s)	129, 307
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	311, 315, 356
BsiEI	CGRYCG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	124, 272, 312
BslI	CCNNNNNNNGG	2 cut(s)	129, 307
BsmAI	GTCTC	2 cut(s)	14, 238
BsmBI	CGTCTC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	311, 315, 356
Bso31I	GGTCTC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	93, 151, 222
BspANI	GGCC	3 cut(s)	311, 315, 356
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	301, 380
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	14, 238
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 260, 312
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	122, 300
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	311, 315, 356
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	309, 314, 355
CseI	GACGC	1 cut(s)	191
CviAII	CATG	3 cut(s)	196, 217, 376
CviJI	RGCY	5 cut(s)	311, 315, 332, 356, 437
CviKI_1	RGCY	5 cut(s)	311, 315, 332, 356, 437
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EciI	GGCGGA	2 cut(s)	82, 211
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	199, 220, 379
FaiI	YATR	7 cut(s)	33, 99, 161, 197, 218, 377, 441
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	3 cut(s)	195, 216, 375
FblI	GTMKAC	1 cut(s)	268
FseI	GGCCGGCC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	311, 315, 356
HapII	CCGG	3 cut(s)	124, 272, 312
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	199, 220, 379
HincII	GTYRAC	2 cut(s)	167, 269
HindII	GTYRAC	2 cut(s)	167, 269
HpaII	CCGG	3 cut(s)	124, 272, 312
Hpy166II	GTNNAC	2 cut(s)	167, 269
Hpy188I	TCNGA	1 cut(s)	87
Hpy8I	GTNNAC	2 cut(s)	167, 269
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	16, 247, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 260, 312
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	199, 220, 379
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	137, 238, 285, 287, 292, 314, 325, 330
LweI	GCATC	1 cut(s)	181
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	4 cut(s)	248, 347, 362, 454
MnlI	CCTC	2 cut(s)	322, 346
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	124, 272, 312
MspR9I	CCNGG	2 cut(s)	124, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	191, 260, 312
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	1 cut(s)	172
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	199, 220, 379
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	379
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	3 cut(s)	309, 314, 355
PsuI	RGATCY	1 cut(s)	172
RigI	GGCCGGCC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	3 cut(s)	309, 314, 355
ScrFI	CCNGG	2 cut(s)	124, 302
SetI	ASST	3 cut(s)	105, 134, 439
SfaNI	GCATC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	248, 347, 362, 454
SsiI	CCGC	3 cut(s)	93, 151, 222
StyD4I	CCNGG	2 cut(s)	122, 300
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	69, 268, 351
TasI	AATT	4 cut(s)	248, 347, 362, 454
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	4 cut(s)	205, 387, 423, 437
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	347, 362
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.