Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003702

Physical Location & Seq

Genomic Coordinates Reverse (-)

56901199 .. 56903848

Gene Structure 2650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGAAAAGGAGAGATATATATAGAGCCATGGCCTTGAGAACAATGATGAGGAAGATAGGGAGTAAACTGTTACCCAGGCACCAGATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCATTGTTTCAGCAAGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTTTAAGGTATCCCATCTCAGGTCATGGACTAAACTTGGAGTTATGACAGCTTCTCAACGCAACATAAGGCTCGGCTTTGGAATTTGGGCGAAGTTTCATATTTCCGGCATGCATGTTGAAGGAAAGTTAAACATTGAACACCCCACAGCAACGCGCGGGAGTCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.84

Weight (kDa)

11.24

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003702)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155011 RchiOBHm_Chr6g0248191
rosa_laevigata	RLG00000016197 RLG00000020807 RLG00000020810 RLG00000030446
rosa_roxburghii	Rroxscaffold_4G00329430 Rroxscaffold_5G00341800 Rroxscaffold_7G00209330
rosa_rugosa	Rorug07G0102100 Rorug07G0183200
rosa_samantha	Rh1AG068200 Rh1AG068400 Rh1BG027700 Rh1BG027800 Rh1BG040000 Rh1BG244700 Rh1DG039300 Rh1DG345400 Rh2BG522000 Rh2DG532100 Rh4AG026700 Rh4CG029500 Rh4CG219000 Rh6AG074200 Rh6AG141300 Rh6BG041100 Rh6BG313500 Rh6DG322500 Rh7BG337700 Rh7BG367100 Rh7DG248600
rosa_wichuraiana	Rw2G004910 Rw2G008070 Rw6G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccII	CGCG	2 cut(s)	349, 351
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	91, 213
AgsI	TTSAA	2 cut(s)	314, 332
AjnI	CCWGG	2 cut(s)	77, 139
AluBI	AGCT	2 cut(s)	178, 245
AluI	AGCT	2 cut(s)	178, 245
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	122, 125
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	109, 112
BccI	CCATC	2 cut(s)	192, 216
BciT130I	CCWGG	2 cut(s)	79, 141
BciVI	GTATCC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	2 cut(s)	79, 141
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	79, 141
BpuEI	CTTGAG	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	30, 77, 140
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 213
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	79, 141
BseDI	CCNNGG	3 cut(s)	30, 77, 140
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	91, 213
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	109, 112
Bsh1236I	CGCG	2 cut(s)	349, 351
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	91, 213
BsnI	GGCC	1 cut(s)	35
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	349, 351
BspLI	GGNNCC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	30, 77, 140
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	79, 141
Bst4CI	ACNGT	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	349, 351
BstHHI	GCGC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 134, 143
BstNI	CCWGG	2 cut(s)	79, 141
BstNSI	RCATGY	2 cut(s)	307, 311
BstSCI	CCNGG	2 cut(s)	77, 139
BstUI	CGCG	2 cut(s)	349, 351
BstV1I	GCAGC	2 cut(s)	109, 112
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	351
CviAII	CATG	4 cut(s)	31, 219, 304, 308
CviJI	RGCY	6 cut(s)	29, 35, 178, 245, 265, 270
CviKI_1	RGCY	6 cut(s)	29, 35, 178, 245, 265, 270
DdeI	CTNAG	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	77, 139
EcoT14I	CCWWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	34, 222, 307, 311
FatI	CATG	4 cut(s)	30, 218, 303, 307
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	1 cut(s)	364
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	123, 126
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	34, 222, 307, 311
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	128, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 134, 143
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	34, 222, 307, 311
HspAI	GCGC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	64, 91, 98, 126, 153, 199, 201, 313
Lsp1109I	GCAGC	2 cut(s)	109, 112
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	67
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	309
MseI	TTAA	2 cut(s)	198, 323
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	79, 141
MvaI	CCWGG	2 cut(s)	79, 141
MvnI	CGCG	2 cut(s)	349, 351
MwoI	GCNNNNNNNGC	3 cut(s)	122, 134, 143
NcoI	CCATGG	1 cut(s)	30
NlaIII	CATG	4 cut(s)	34, 222, 307, 311
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	2 cut(s)	307, 311
PaeI	GCATGC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	124, 127
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	77, 139
PspGI	CCWGG	2 cut(s)	77, 139
PspN4I	GGNNCC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	198, 323
SatI	GCNGC	2 cut(s)	123, 126
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	79, 141
SetI	ASST	4 cut(s)	180, 204, 218, 247
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	364
StyD4I	CCNGG	2 cut(s)	77, 139
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	72
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	198, 323
Tru9I	TTAA	2 cut(s)	198, 323
TseI	GCWGC	2 cut(s)	122, 125
TspDTI	ATGAA	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	2 cut(s)	307, 311
XspI	CTAG	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.