Rh6AG074200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003702
Physical Location & Seq
Reverse (-)
10552221 .. 10552723
503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG074200.1

Sequence Viewer

Length: 357 bp
ATGACGACCTCGAGTTCGTGTCGTTTCAGAAATCCGCCAACAAGGTTTTCTTCGGCGACAACACCTGGATTGATCCGGTTTTTCTGGGTCTTCAGCCTCAACCTTATAAGTCAACGGGATCTAAACGACACCAATGACGCCGTGCCGACGTTGTCGTCGTCCACTCCGCCGGTTTCGTCTCCTTCCCATTGCAATTTGCAAAAAGAGCAAGTCGATCAGAATGTGAGAAGTCTGGTGTTTGGACATCAATCTCCAAATTGCTTTCCCTTTCCTTGTTTGAAATGTTTCAATGCAATTTTGGTTTGGGTTTTCATGGAGAAAATCTTGTTGGAAGAGGCTGGGTATGGAGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.28

Weight (kDa)

7.64

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AasI GACNNNNNNGTC 1 cut(s) 154
AciI CCGC 2 cut(s) 35, 167
AclWI GGATC 2 cut(s) 67, 126
AcuI CTGAAG 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 138
AgsI TTSAA 2 cut(s) 280, 289
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 4 cut(s) 31, 63, 311, 343
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 2 cut(s) 67, 126
Ama87I CYCGRG 1 cut(s) 10
ArsI GACNNNNNNTTYG 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 2 cut(s) 76, 170
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 3 cut(s) 72, 118, 214
BspACI CCGC 2 cut(s) 35, 167
BspPI GGATC 2 cut(s) 67, 126
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssMI GATC 3 cut(s) 72, 118, 214
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 138
BstKTI GATC 3 cut(s) 75, 121, 217
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 3 cut(s) 72, 118, 214
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 169
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 313
CviJI RGCY 2 cut(s) 96, 338
CviKI_1 RGCY 2 cut(s) 96, 338
DpnI GATC 3 cut(s) 74, 120, 216
DpnII GATC 3 cut(s) 72, 118, 214
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 2 cut(s) 24, 156
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 107, 314, 345, 352
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 342
HapII CCGG 2 cut(s) 76, 170
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HpaII CCGG 2 cut(s) 76, 170
Hpy166II GTNNAC 2 cut(s) 113, 162
Hpy188I TCNGA 2 cut(s) 29, 219
Hpy8I GTNNAC 2 cut(s) 113, 162
Hpy99I CGWCG 2 cut(s) 151, 160
HpyAV CCTTC 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 192, 199, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 72, 118, 214
LpnPI CCDG 7 cut(s) 51, 70, 78, 89, 183, 218, 324
MaeII ACGT 1 cut(s) 149
MalI GATC 3 cut(s) 74, 120, 216
MboI GATC 3 cut(s) 72, 118, 214
MboII GAAGA 3 cut(s) 42, 82, 344
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 193, 256, 294
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 3 cut(s) 19, 107, 328
MroXI GAANNNNTTC 1 cut(s) 284
MspI CCGG 2 cut(s) 76, 170
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 3 cut(s) 72, 118, 214
NlaIII CATG 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 151
PsiI TTATAA 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 10
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 72, 118, 214
ScrFI CCNGG 1 cut(s) 66
SetI ASST 5 cut(s) 11, 47, 67, 105, 152
Sfr274I CTCGAG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 193, 256, 294
SsiI CCGC 2 cut(s) 35, 167
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 11, 213
TasI AATT 3 cut(s) 193, 256, 294
TspDTI ATGAA 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.