Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Forward (+)

3969165 .. 3969610

Gene Structure 446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCTCTCATTTTTTTTATTAAAAGGAACTCCACAACATATGGAGCCAAGAACAGAGGTGGACCTCATTTCAAAAACTTCGTGGACTTGTTGAAAGATTTGTTGGCAATGGCATTGGCCAATGGTCTGCTCAGAAGAGGACTTCCCGCAGCTTCCAATCTCATTCCTGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCAAGGCGGTAAAGTCATCGTGTGAGGGGTTTCATGTTAAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTCTGGTGAGTAAAAATAATTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

9.6

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	31 - 102	6.6e-08	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 230
AcoI	YGGCCR	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	73, 94
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	9, 309
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	9, 309
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	145, 189
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	9, 309
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	147, 230
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	144, 190
BspLI	GGNNCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	131, 198, 330
BstF5I	GGATG	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	9, 309
BstNI	CCWGG	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	286, 305
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	4 cut(s)	47, 119, 152, 184
CviKI_1	RGCY	4 cut(s)	47, 119, 152, 184
DdeI	CTNAG	3 cut(s)	131, 198, 330
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	40, 42, 181, 258
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	62, 85
Hpy188I	TCNGA	2 cut(s)	134, 270
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	62, 85
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	300
HpyF3I	CTNAG	3 cut(s)	131, 198, 330
Hsp92II	CATG	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	180, 185, 197, 224, 292, 293
Lsp1109I	GCAGC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	2 cut(s)	273, 322
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	5 cut(s)	50, 75, 131, 193, 241
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	21, 261
Msp20I	TGGCCA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	40
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	21, 261
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	4 cut(s)	61, 67, 154, 180
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	273, 322
SsiI	CCGC	2 cut(s)	147, 230
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	2 cut(s)	273, 322
Tru1I	TTAA	2 cut(s)	21, 261
Tru9I	TTAA	2 cut(s)	21, 261
TscAI	CASTG	2 cut(s)	286, 305
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	286, 305
VpaK11BI	GGWCC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.