Rw7G002370

40S ribosomal protein S12-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
1938755 .. 1941441
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002370.1

Sequence Viewer

Length: 1647 bp
ATGATAAACCAGGCAGAAGAAGAAGCAACGTCTCTTTTTATCATGATGCAATATGAGCACGGCCCGCACTTTGGATCGTTGTATGAATTTTATTTAGGTAAGCAAGACTCCTTTCGACCTTTAGCACAGTTCAGGGAAAAGGATATTAGCCTTCCATTAAGTTGGAAATTTTGCTCCTTGGATACCGACAACATATGTCTATTCCCAGATAGTGGTCCTTTACCTCCTGATGATGTGGTGAACCCCTTGTCAGGGTATATGTTCAATGTCGATACCAAGAAGTGTCATTTAATAAAGCCGCCCGTTGCTCCCAAATGGGACGGACCTGTTGTATCTGCATATGGGAAACTTTACTCTATCACGGTTCCATACTGCTCATCTGATGTGCCAGAGCCCTCTTTCGAGCGATATGATCCTTACAGGTGTTGTTGGGAAACTCGGAAATCTTTTCCTTATGGTAAAGATTGGTCCAAACGAAGGATCGGGGGTCATGCCGTTTGTGATGGACTCATCCTGTATAATATAATCTCTTCTGTTGGACTCATTCTGGAGGATAATCCATTCTCTTGCTCTAGAAAATATCAAGATGAACTGTGGGCTTATGATGTAACACTGGATGAATGGCTTCCAGTTAGGGTCGAGAACACAGATTGCTATAGTTTCCGAGGACCGGCTGTATGTGCGGACAAGACTATCTATGCGTTATCAAGCAGCTTGGCGGTTATGGCACTCTCTATCACAAGGCATGAAAATCTTGTTACCTGCTCTCTAAAGTCACAGTTTGTTTGTCCAGAGTTTGGGGACTTTCGACCAGGCGCACGGAGAATCGAGCGTTTGATTTATTTGGGTGACCTGAACTTTTGTCTTGTTCAGACTGGATTTCGGTATGACATTAGATCCAGTCAATCTCTTAAAATTACCACATTTCACCTTGTGGGAGAAACCAATATCAAAATCGAACGTTCATTCATTCATGAGGTGCCTCTTGAGGGTTGTATGAGATTCACTATTGAACATTGCTTTATCCGTACTTTTAAACGCATGGAACTCGAAGAGATAACTAGTCGCATCGACTTCTTATACCAAGAAGACAGATTCGGCATTGATACTGACTTCATCATCAAGCCTTTTGACTTCATCTTCAAGCCAGAATATGATTATCTCGAGATCGACCAGCCAAATTATGCAAATATTGAAGAAGAAAATATGTCCTTACAAGGTGGACCTCATTTCAAAAACTTCGTGGACTTATTGAGAGATTTGTTGGCAATGGCATTGGCCAATGGTTTGCTCAGAAGAGGATTGCCCACAGCTTCCAATCTCATTCCGGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCGAGGCGGTAAAGTCATTGTGTGAGGGGTATCATGTTAAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTGTGTTTGGTGATAAGGATTCTGAAGGAAAGGCAAAGAGGGTGGTTCGTTGCTCTTGCGTTGTTATTGAGGAAGGCATATATGAGACGGAACTTCATAAAGCGGTTTTGGAGGTCTGGAAGTCTCTCCCATCAAAGTTGGAAGTGCTGGAAGAGTCTGGATTGTGTCGCCCTTTTGTCTAG

Protein Analysis

548

Amino Acids

62.89

Weight (kDa)

5.12

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 419 - 509 4.6e-08 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 979
AccB7I CCANNNNNTGG 2 cut(s) 212, 797
AccIII TCCGGA 1 cut(s) 1327
AciI CCGC 6 cut(s) 65, 299, 683, 719, 1391, 1568
AclI AACGTT 1 cut(s) 961
AclWI GGATC 4 cut(s) 82, 407, 488, 891
AcoI YGGCCR 1 cut(s) 1278
AcsI RAATTY 2 cut(s) 86, 167
AcuI CTGAAG 1 cut(s) 1509
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 1 cut(s) 1030
AfiI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 252, 477, 670, 797, 989
AgsI TTSAA 5 cut(s) 265, 1013, 1144, 1196, 1234
AhlI ACTAGT 1 cut(s) 1061
AjnI CCWGG 3 cut(s) 9, 811, 1371
AluBI AGCT 2 cut(s) 714, 1313
AluI AGCT 2 cut(s) 714, 1313
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 36, 1544, 1593
AlwI GGATC 4 cut(s) 82, 407, 488, 891
Ama87I CYCGRG 1 cut(s) 1163
Aor13HI TCCGGA 1 cut(s) 1327
AoxI GGCC 2 cut(s) 61, 1278
ApeKI GCWGC 1 cut(s) 711
ApoI RAATTY 2 cut(s) 86, 167
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 7 cut(s) 62, 215, 323, 468, 668, 1223, 1330
AsuHPI GGTGA 4 cut(s) 250, 860, 920, 1487
AvaI CYCGRG 1 cut(s) 1163
AvaII GGWCC 6 cut(s) 215, 323, 468, 668, 1223, 1330
BalI TGGCCA 1 cut(s) 1280
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 1095
Bbv12I GWGCWC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 1359
BbvI GCAGC 1 cut(s) 723
BccI CCATC 2 cut(s) 497, 1603
BceAI ACGGC 2 cut(s) 76, 479
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BciT130I CCWGG 3 cut(s) 11, 813, 1373
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 36, 1544, 1593
BcuI ACTAGT 1 cut(s) 1061
BfaI CTAG 3 cut(s) 573, 1062, 1645
BfmI CTRYAG 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 2 cut(s) 299, 712
BlsI GCNGC 2 cut(s) 300, 713
Bme1390I CCNGG 3 cut(s) 11, 813, 1373
Bme18I GGWCC 6 cut(s) 215, 323, 468, 668, 1223, 1330
BmeT110I CYCGRG 1 cut(s) 1163
BmgT120I GGNCC 7 cut(s) 62, 215, 323, 468, 668, 1223, 1330
BmiI GGNNCC 2 cut(s) 366, 981
BmrFI CCNGG 3 cut(s) 11, 813, 1373
BmsI GCATC 2 cut(s) 36, 1077
BoxI GACNNNNGTC 1 cut(s) 1462
BpiI GAAGAC 1 cut(s) 1095
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 1359
BpuEI CTTGAG 1 cut(s) 1007
BsaJI CCNNGG 2 cut(s) 177, 664
BsaWI WCCGGW 1 cut(s) 1327
Bsc4I CCNNNNNNNGG 8 cut(s) 71, 212, 251, 252, 477, 670, 797, 989
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 5 cut(s) 618, 629, 880, 900, 1440
Bse3DI GCAATG 2 cut(s) 1015, 1275
BseAI TCCGGA 1 cut(s) 1327
BseBI CCWGG 3 cut(s) 11, 813, 1373
BseDI CCNNGG 2 cut(s) 177, 664
BseGI GGATG 3 cut(s) 510, 622, 1381
BseLI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 252, 477, 670, 797, 989
BseMI GCAATG 2 cut(s) 1015, 1275
BseMII CTCAG 2 cut(s) 1306, 1350
BseNI ACTGG 5 cut(s) 618, 629, 880, 900, 1440
BseXI GCAGC 1 cut(s) 723
BshFI GGCC 2 cut(s) 63, 1280
BshNI GGYRCC 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 1163
BsiSI CCGG 2 cut(s) 671, 1328
BslFI GGGAC 2 cut(s) 332, 815
BslI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 252, 477, 670, 797, 989
BsmAI GTCTC 3 cut(s) 36, 1544, 1593
BsmBI CGTCTC 2 cut(s) 36, 1544
BsmFI GGGAC 2 cut(s) 332, 815
BsnI GGCC 2 cut(s) 63, 1280
BsoBI CYCGRG 1 cut(s) 1163
Bsp1286I GDGCHC 2 cut(s) 60, 396
Bsp13I TCCGGA 1 cut(s) 1327
Bsp143I GATC 5 cut(s) 74, 412, 480, 896, 1167
BspACI CCGC 6 cut(s) 65, 299, 683, 719, 1391, 1568
BspANI GGCC 2 cut(s) 63, 1280
BspCNI CTCAG 2 cut(s) 1305, 1351
BspEI TCCGGA 1 cut(s) 1327
BspHI TCATGA 2 cut(s) 42, 973
BspLI GGNNCC 2 cut(s) 366, 981
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 4 cut(s) 82, 407, 488, 891
BspT107I GGYRCC 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 1015, 1275
BsrFI RCCGGY 1 cut(s) 670
BsrI ACTGG 5 cut(s) 618, 629, 880, 900, 1440
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 177, 664
BssMI GATC 5 cut(s) 74, 412, 480, 896, 1167
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 11, 813, 1373
Bst4CI ACNGT 5 cut(s) 129, 364, 594, 780, 1461
Bst6I CTCTTC 4 cut(s) 535, 1047, 1291, 1611
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 1292, 1359
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 3 cut(s) 510, 622, 1381
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 5 cut(s) 77, 415, 483, 899, 1170
BstMAI GTCTC 3 cut(s) 36, 1544, 1593
BstMBI GATC 5 cut(s) 74, 412, 480, 896, 1167
BstMWI GCNNNNNNNGC 4 cut(s) 55, 64, 680, 725
BstNI CCWGG 3 cut(s) 11, 813, 1373
BstPAI GACNNNNGTC 1 cut(s) 1462
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 9, 811, 1371
BstSFI CTRYAG 1 cut(s) 655
BstV1I GCAGC 1 cut(s) 723
BstV2I GAAGAC 1 cut(s) 1095
BstX2I RGATCY 1 cut(s) 896
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 1 cut(s) 896
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 63, 1280
BtsCI GGATG 3 cut(s) 510, 622, 1381
BtsIMutI CAGTG 3 cut(s) 611, 1447, 1466
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 2 cut(s) 42, 973
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 7 cut(s) 62, 215, 323, 468, 668, 1223, 1330
Csp6I GTAC 1 cut(s) 1029
CspCI CAANNNNNGTGG 2 cut(s) 1488, 1523
CviAII CATG 6 cut(s) 43, 491, 746, 974, 1042, 1418
CviQI GTAC 1 cut(s) 1029
DdeI CTNAG 2 cut(s) 1292, 1359
DpnI GATC 5 cut(s) 76, 414, 482, 898, 1169
DpnII GATC 5 cut(s) 74, 412, 480, 896, 1167
DraI TTTAAA 1 cut(s) 1036
DraIII CACNNNGTG 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 1278
Eam1104I CTCTTC 4 cut(s) 535, 1047, 1291, 1611
EarI CTCTTC 4 cut(s) 535, 1047, 1291, 1611
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 6 cut(s) 215, 323, 468, 668, 1223, 1330
Eco57I CTGAAG 1 cut(s) 1509
Eco88I CYCGRG 1 cut(s) 1163
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 3 cut(s) 9, 811, 1371
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 2 cut(s) 36, 1544
FaeI CATG 6 cut(s) 46, 494, 749, 977, 1045, 1421
FaqI GGGAC 2 cut(s) 332, 815
FatI CATG 6 cut(s) 42, 490, 745, 973, 1041, 1417
FauI CCCGC 1 cut(s) 72
FauNDI CATATG 2 cut(s) 194, 340
Fnu4HI GCNGC 2 cut(s) 299, 712
FokI GGATG 3 cut(s) 497, 629, 1388
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 299, 712
FspBI CTAG 3 cut(s) 573, 1062, 1645
GlaI GCGC 1 cut(s) 817
GluI GCNGC 2 cut(s) 299, 712
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 2 cut(s) 63, 1280
HapII CCGG 2 cut(s) 671, 1328
HhaI GCGC 1 cut(s) 818
Hin1II CATG 6 cut(s) 46, 494, 749, 977, 1045, 1421
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HinfI GANTC 8 cut(s) 107, 507, 540, 825, 1002, 1095, 1484, 1619
HpaII CCGG 2 cut(s) 671, 1328
HphI GGTGA 4 cut(s) 250, 860, 920, 1487
Hpy166II GTNNAC 3 cut(s) 241, 1223, 1246
Hpy188I TCNGA 7 cut(s) 382, 441, 665, 873, 1295, 1431, 1489
Hpy8I GTNNAC 3 cut(s) 241, 1223, 1246
HpyAV CCTTC 5 cut(s) 161, 471, 1330, 1484, 1532
HpyCH4III ACNGT 5 cut(s) 129, 364, 594, 780, 1461
HpyCH4IV ACGT 2 cut(s) 29, 961
HpyCH4V TGCA 3 cut(s) 49, 338, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 64, 680, 725
HpyF3I CTNAG 2 cut(s) 1292, 1359
HpySE526I ACGT 2 cut(s) 29, 961
Hsp92II CATG 6 cut(s) 46, 494, 749, 977, 1045, 1421
HspAI GCGC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 1327
Kzo9I GATC 5 cut(s) 74, 412, 480, 896, 1167
LmnI GCTCC 2 cut(s) 179, 313
Lsp1109I GCAGC 1 cut(s) 723
LweI GCATC 2 cut(s) 36, 1077
MaeI CTAG 3 cut(s) 573, 1062, 1645
MaeII ACGT 2 cut(s) 29, 961
MaeIII GTNAC 4 cut(s) 607, 757, 774, 848
MalI GATC 5 cut(s) 76, 414, 482, 898, 1169
MboI GATC 5 cut(s) 74, 412, 480, 896, 1167
MfeI CAATTG 1 cut(s) 1434
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 2 cut(s) 60, 396
MlsI TGGCCA 1 cut(s) 1280
MluCI AATT 5 cut(s) 86, 167, 915, 1180, 1434
MluNI TGGCCA 1 cut(s) 1280
MlyI GAGTC 4 cut(s) 101, 501, 534, 1628
MmeI TCCRAC 3 cut(s) 143, 517, 1584
Mox20I TGGCCA 1 cut(s) 1280
MroI TCCGGA 1 cut(s) 1327
MroXI GAANNNNTTC 1 cut(s) 624
MscI TGGCCA 1 cut(s) 1280
MseI TTAA 5 cut(s) 158, 290, 912, 1035, 1422
Msp20I TGGCCA 1 cut(s) 1280
MspI CCGG 2 cut(s) 671, 1328
MspR9I CCNGG 3 cut(s) 11, 813, 1373
MunI CAATTG 1 cut(s) 1434
MvaI CCWGG 3 cut(s) 11, 813, 1373
MwoI GCNNNNNNNGC 4 cut(s) 55, 64, 680, 725
NdeI CATATG 2 cut(s) 194, 340
NdeII GATC 5 cut(s) 74, 412, 480, 896, 1167
NlaIII CATG 6 cut(s) 46, 494, 749, 977, 1045, 1421
NlaIV GGNNCC 2 cut(s) 366, 981
NmuCI GTSAC 2 cut(s) 774, 848
PaeR7I CTCGAG 1 cut(s) 1163
PagI TCATGA 2 cut(s) 42, 973
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 4 cut(s) 825, 1002, 1095, 1484
PflMI CCANNNNNTGG 2 cut(s) 212, 797
PkrI GCNGC 2 cut(s) 300, 713
PleI GAGTC 4 cut(s) 101, 501, 534, 1627
PpsI GAGTC 4 cut(s) 101, 501, 534, 1627
PshAI GACNNNNGTC 1 cut(s) 1462
Psp1406I AACGTT 1 cut(s) 961
Psp6I CCWGG 3 cut(s) 9, 811, 1371
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 3 cut(s) 9, 811, 1371
PspN4I GGNNCC 2 cut(s) 366, 981
PspPI GGNCC 7 cut(s) 62, 215, 323, 468, 668, 1223, 1330
PsuI RGATCY 1 cut(s) 896
RsaI GTAC 1 cut(s) 1030
RsaNI GTAC 1 cut(s) 1029
SaqAI TTAA 5 cut(s) 158, 290, 912, 1035, 1422
SatI GCNGC 2 cut(s) 299, 712
Sau3AI GATC 5 cut(s) 74, 412, 480, 896, 1167
Sau96I GGNCC 7 cut(s) 62, 215, 323, 468, 668, 1223, 1330
SchI GAGTC 4 cut(s) 101, 501, 534, 1628
ScrFI CCNGG 3 cut(s) 11, 813, 1373
SduI GDGCHC 2 cut(s) 60, 396
SfaNI GCATC 2 cut(s) 36, 1077
SfcI CTRYAG 1 cut(s) 655
Sfr274I CTCGAG 1 cut(s) 1163
SinI GGWCC 6 cut(s) 215, 323, 468, 668, 1223, 1330
SlaI CTCGAG 1 cut(s) 1163
SmlI CTYRAG 2 cut(s) 986, 1163
SmoI CTYRAG 2 cut(s) 986, 1163
SpeI ACTAGT 1 cut(s) 1061
Sse9I AATT 5 cut(s) 86, 167, 915, 1180, 1434
SsiI CCGC 6 cut(s) 65, 299, 683, 719, 1391, 1568
SspI AATATT 1 cut(s) 1192
SspMI CTAG 3 cut(s) 573, 1062, 1645
StyD4I CCNGG 3 cut(s) 9, 811, 1371
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 5 cut(s) 129, 364, 594, 780, 1461
TaiI ACGT 2 cut(s) 32, 964
TasI AATT 5 cut(s) 86, 167, 915, 1180, 1434
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 4 cut(s) 825, 1002, 1095, 1484
Tru1I TTAA 5 cut(s) 158, 290, 912, 1035, 1422
Tru9I TTAA 5 cut(s) 158, 290, 912, 1035, 1422
TscAI CASTG 3 cut(s) 618, 1447, 1466
TseFI GTSAC 2 cut(s) 774, 848
TseI GCWGC 1 cut(s) 711
Tsp45I GTSAC 2 cut(s) 774, 848
TspGWI ACGGA 4 cut(s) 336, 835, 1016, 1568
TspRI CASTG 3 cut(s) 618, 1447, 1466
Van91I CCANNNNNTGG 2 cut(s) 212, 797
VpaK11BI GGWCC 6 cut(s) 215, 323, 468, 668, 1223, 1330
XapI RAATTY 2 cut(s) 86, 167
XbaI TCTAGA 1 cut(s) 572
XhoI CTCGAG 1 cut(s) 1163
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 3 cut(s) 573, 1062, 1645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.