Rh4CG028500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004882
Physical Location & Seq
Forward (+)
5349732 .. 5351068
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG028500.1

Sequence Viewer

Length: 351 bp
ATGCTCAAGAAGCTCCCCTTCCCGGTCCAGCCGAAGCTGCCACAGACGAGGATGAGCGTTCTGATGACGACATCTCGGCTTTTCTGTCAACATTTAGTATGCTACGACAGATTCGACATCTTTCTAACCGATGCACAAGTGTCAGACACAATATATGTGAACGGTCAGTCAGAATTGCCCGTTCCATGGGTTCAAAGACAAATTCGGGAGCTAGGAGAGGTTTTTGTGCAGATGCAAAAGACTAATGCTACTCATAGTGCACTCGATAAGAGCTCTAGTTTTGTCATGTGCAATGATGAAGTGAAAGTAGTAAAGCTTGATGGAAATTTGGAGGTCACTATGCTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

6.71

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 201, 325
AfiI CCNNNNNNNGG 2 cut(s) 22, 186
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 5 cut(s) 13, 37, 211, 273, 316
AluI AGCT 5 cut(s) 13, 37, 211, 273, 316
Alw21I GWGCWC 2 cut(s) 262, 275
Alw44I GTGCAC 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 37, 343
ApoI RAATTY 2 cut(s) 201, 325
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 262, 275
BbvI GCAGC 2 cut(s) 24, 330
BccI CCATC 1 cut(s) 314
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 2 cut(s) 212, 276
BisI GCNGC 2 cut(s) 38, 344
BlsI GCNGC 2 cut(s) 39, 345
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 121, 222
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 186
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 22, 186
BseMI GCAATG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 2 cut(s) 24, 330
BsgI GTGCAG 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 262, 275
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 22, 186
Bsp1286I GDGCHC 2 cut(s) 262, 275
Bsp19I CCATGG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 10, 37
BstSCI CCNGG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 24, 330
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 2 cut(s) 186, 286
CviJI RGCY 7 cut(s) 13, 31, 37, 79, 211, 273, 316
CviKI_1 RGCY 7 cut(s) 13, 31, 37, 79, 211, 273, 316
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 189, 289
FaiI YATR 7 cut(s) 100, 154, 156, 187, 255, 287, 341
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 2 cut(s) 185, 285
Fnu4HI GCNGC 2 cut(s) 38, 344
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 38, 344
FspBI CTAG 2 cut(s) 212, 276
GluI GCNGC 2 cut(s) 38, 344
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 189, 289
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 89, 160, 260
Hpy188I TCNGA 3 cut(s) 63, 145, 172
Hpy188III TCNNGA 2 cut(s) 7, 206
Hpy8I GTNNAC 3 cut(s) 89, 160, 260
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 6 cut(s) 134, 229, 235, 260, 291, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 37
Hsp92II CATG 2 cut(s) 189, 289
LmnI GCTCC 2 cut(s) 18, 208
LpnPI CCDG 2 cut(s) 36, 41
Lsp1109I GCAGC 2 cut(s) 24, 330
LweI GCATC 2 cut(s) 121, 222
MaeI CTAG 2 cut(s) 212, 276
MaeIII GTNAC 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 262, 275
MluCI AATT 3 cut(s) 173, 201, 325
MnlI CCTC 3 cut(s) 42, 211, 325
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 10, 37
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 185
NlaIII CATG 2 cut(s) 189, 289
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 39, 345
Psp124BI GAGCTC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 2 cut(s) 38, 344
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 262, 275
SetI ASST 7 cut(s) 15, 39, 213, 222, 275, 318, 336
SfaNI GCATC 2 cut(s) 121, 222
SinI GGWCC 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 3 cut(s) 173, 201, 325
SspMI CTAG 2 cut(s) 212, 276
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 114, 264
TasI AATT 3 cut(s) 173, 201, 325
TfiI GAWTC 1 cut(s) 111
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 37, 343
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 312
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 2 cut(s) 201, 325
XspI CTAG 2 cut(s) 212, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.