Rh7DG029800

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004882
Physical Location & Seq
Reverse (-)
2227633 .. 2230319
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG029800.1

Sequence Viewer

Length: 1320 bp
ATGATAAACCAGGCAGAAGAAGAAGCAACGTCTCTTTTTATCATGATGCAATATGAGCACGGCCCGCACTTTGGATCGTTGTATGAATTTTATTTATGTAAGCAAGACTCCTTTCGACCTTTTCGACCTTTAGCACAGTTCAGGGAAAAGGATATTAGCCTTCCATTAAGTTGGAAATTTTGCTCCTTGGATACCGACAACATATGTCTATTCCCAGATAGTGGTCCTTTACCTCCTGATGATGTGGTGAACCCCTTGTCTGGATATATGTTCAATGTCGATACCAATAAGTGTCATTTAATCAAGCCGCCCGTTGCTCCCAAATGGGACGGACCTGTTGTATCTGCATATGGGAAACTTTACTCTATCACGGTTCCATACTGCTCATCTTATGTGCCAGAGCCCTCTTTCGAGCGATATGATCCTTCCAGGTGTTGTTGGGAAACTCGGAAATCTTTTCCTTATGGTAAAGATTGGTCCAAACGAAGGATCGGGGGTCATGCCGTTTGTGATGGACTCATCCTGTATAATATAATCTCTTCTGTTGGACTCATTCTGGAGGATAATCCATTCTCTTGCTCTAGAAAATATCAAGATGAACTGTGGGCTTATGATGTAACACTGGATGAATGGCTTCCAGTTAGGGTCGAGAACACAGATTGCTATAGTTTCCGAGGACCGGCTGTATGTGCGGACAAGACTATCTACGCGTTATCAAGCAGCTTGGCGGTTATGGCACTCTCTATCACAAGGCATGAAAATCTTGTTACCTGCTCTCTAAAGTCACATACTTTTAAACGCATGGAACTCGAAGAGATAACTAGTCGCATCGACTTGTTATACCAAGAAGACAGATTCGGCATTGATACTGACTTCATCATCAAGCCAGAATATGATTATCTCGAGATCGACCAGCCAAATTATGCAAATATTGAAGAAGAAAATATGTCCTTACAAGGTGGACCTCATTTCAAAAACTTCGTGGACTTATTGAGAGATTTGTTGGCAATGGCATTGGCCAATGGTTTGCTCAGAAGAGGATTGCCCACAGCTTCCAATCTCATTCCGGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCAAGGCGGTAAAGTCATTGTGTGAGGGGTATCATGTTGAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTGTGGAAGGCATATATGAGACGGAACTTCATAAAGCGGTTTTGGAGGTCTGGAAGTCTCTCCCATCAAAGTTGGAAGTGCTGGAAGAGTCTGGATTGTGTCGCCCTTTTGTCTAG

Protein Analysis

439

Amino Acids

50.2

Weight (kDa)

4.89

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 332 - 402 5.9e-08 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 710
AccIII TCCGGA 1 cut(s) 1066
AciI CCGC 6 cut(s) 65, 308, 692, 728, 1130, 1241
AclWI GGATC 3 cut(s) 82, 416, 497
AcoI YGGCCR 1 cut(s) 1017
AcsI RAATTY 2 cut(s) 86, 176
AfiI CCNNNNNNNGG 5 cut(s) 71, 221, 260, 486, 679
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 3 cut(s) 274, 935, 973
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 3 cut(s) 9, 428, 1110
AluBI AGCT 2 cut(s) 723, 1052
AluI AGCT 2 cut(s) 723, 1052
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 36, 1217, 1266
AlwI GGATC 3 cut(s) 82, 416, 497
Ama87I CYCGRG 1 cut(s) 902
Aor13HI TCCGGA 1 cut(s) 1066
AoxI GGCC 2 cut(s) 61, 1017
ApeKI GCWGC 1 cut(s) 720
ApoI RAATTY 2 cut(s) 86, 176
Asp700I GAANNNNTTC 1 cut(s) 633
AspS9I GGNCC 7 cut(s) 62, 224, 332, 477, 677, 962, 1069
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 6 cut(s) 224, 332, 477, 677, 962, 1069
BalI TGGCCA 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 1 cut(s) 732
BccI CCATC 2 cut(s) 506, 1276
BceAI ACGGC 2 cut(s) 76, 488
BcgI CGANNNNNNTGC 2 cut(s) 790, 824
BciT130I CCWGG 3 cut(s) 11, 430, 1112
BciVI GTATCC 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 36, 1217, 1266
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 582, 822, 1318
BfmI CTRYAG 1 cut(s) 664
BfuAI ACCTGC 1 cut(s) 779
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 2 cut(s) 308, 721
BlsI GCNGC 2 cut(s) 309, 722
Bme1390I CCNGG 3 cut(s) 11, 430, 1112
Bme18I GGWCC 6 cut(s) 224, 332, 477, 677, 962, 1069
BmeT110I CYCGRG 1 cut(s) 902
BmgT120I GGNCC 7 cut(s) 62, 224, 332, 477, 677, 962, 1069
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 3 cut(s) 11, 430, 1112
BmsI GCATC 2 cut(s) 36, 837
BoxI GACNNNNGTC 1 cut(s) 1201
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 186, 673
BsaWI WCCGGW 1 cut(s) 1066
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 221, 260, 486, 679
Bse118I RCCGGY 1 cut(s) 679
Bse1I ACTGG 3 cut(s) 627, 638, 1179
Bse3DI GCAATG 1 cut(s) 1014
BseAI TCCGGA 1 cut(s) 1066
BseBI CCWGG 3 cut(s) 11, 430, 1112
BseDI CCNNGG 2 cut(s) 186, 673
BseGI GGATG 3 cut(s) 519, 631, 1120
BseLI CCNNNNNNNGG 5 cut(s) 71, 221, 260, 486, 679
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 2 cut(s) 1045, 1089
BseNI ACTGG 3 cut(s) 627, 638, 1179
BseXI GCAGC 1 cut(s) 732
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 2 cut(s) 63, 1019
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 2 cut(s) 680, 1067
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 5 cut(s) 71, 221, 260, 486, 679
BsmAI GTCTC 3 cut(s) 36, 1217, 1266
BsmBI CGTCTC 2 cut(s) 36, 1217
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 63, 1019
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 2 cut(s) 60, 405
Bsp13I TCCGGA 1 cut(s) 1066
Bsp143I GATC 4 cut(s) 74, 421, 489, 906
BspACI CCGC 6 cut(s) 65, 308, 692, 728, 1130, 1241
BspANI GGCC 2 cut(s) 63, 1019
BspCNI CTCAG 2 cut(s) 1044, 1090
BspEI TCCGGA 1 cut(s) 1066
BspFNI CGCG 1 cut(s) 710
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 3 cut(s) 82, 416, 497
BsrDI GCAATG 1 cut(s) 1014
BsrFI RCCGGY 1 cut(s) 679
BsrI ACTGG 3 cut(s) 627, 638, 1179
BssAI RCCGGY 1 cut(s) 679
BssECI CCNNGG 2 cut(s) 186, 673
BssMI GATC 4 cut(s) 74, 421, 489, 906
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 11, 430, 1112
Bst4CI ACNGT 4 cut(s) 138, 373, 603, 1200
Bst6I CTCTTC 4 cut(s) 544, 807, 1030, 1284
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 1031, 1098
BstF5I GGATG 3 cut(s) 519, 631, 1120
BstFNI CGCG 1 cut(s) 710
BstKTI GATC 4 cut(s) 77, 424, 492, 909
BstMAI GTCTC 3 cut(s) 36, 1217, 1266
BstMBI GATC 4 cut(s) 74, 421, 489, 906
BstMWI GCNNNNNNNGC 4 cut(s) 55, 64, 689, 734
BstNI CCWGG 3 cut(s) 11, 430, 1112
BstPAI GACNNNNGTC 1 cut(s) 1201
BstSCI CCNGG 3 cut(s) 9, 428, 1110
BstSFI CTRYAG 1 cut(s) 664
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 732
BstV2I GAAGAC 1 cut(s) 855
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 63, 1019
BtsCI GGATG 3 cut(s) 519, 631, 1120
BtsIMutI CAGTG 3 cut(s) 620, 1186, 1205
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 679
Cfr13I GGNCC 7 cut(s) 62, 224, 332, 477, 677, 962, 1069
CviAII CATG 5 cut(s) 43, 500, 755, 802, 1157
DdeI CTNAG 2 cut(s) 1031, 1098
DpnI GATC 4 cut(s) 76, 423, 491, 908
DpnII GATC 4 cut(s) 74, 421, 489, 906
DraI TTTAAA 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 1017
Eam1104I CTCTTC 4 cut(s) 544, 807, 1030, 1284
EarI CTCTTC 4 cut(s) 544, 807, 1030, 1284
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 6 cut(s) 224, 332, 477, 677, 962, 1069
Eco88I CYCGRG 1 cut(s) 902
EcoRII CCWGG 3 cut(s) 9, 428, 1110
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 2 cut(s) 36, 1217
FaeI CATG 5 cut(s) 46, 503, 758, 805, 1160
FaqI GGGAC 1 cut(s) 341
FatI CATG 5 cut(s) 42, 499, 754, 801, 1156
FauI CCCGC 1 cut(s) 72
FauNDI CATATG 2 cut(s) 203, 349
Fnu4HI GCNGC 2 cut(s) 308, 721
FokI GGATG 3 cut(s) 506, 638, 1127
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 308, 721
FspBI CTAG 3 cut(s) 582, 822, 1318
GluI GCNGC 2 cut(s) 308, 721
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 2 cut(s) 63, 1019
HapII CCGG 2 cut(s) 680, 1067
Hin1II CATG 5 cut(s) 46, 503, 758, 805, 1160
HinfI GANTC 5 cut(s) 107, 516, 549, 855, 1292
HpaII CCGG 2 cut(s) 680, 1067
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 250, 962, 985
Hpy188I TCNGA 4 cut(s) 450, 674, 1034, 1170
Hpy8I GTNNAC 3 cut(s) 250, 962, 985
HpyAV CCTTC 5 cut(s) 170, 435, 480, 1069, 1205
HpyCH4III ACNGT 4 cut(s) 138, 373, 603, 1200
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 49, 347, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 64, 689, 734
HpyF3I CTNAG 2 cut(s) 1031, 1098
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 5 cut(s) 46, 503, 758, 805, 1160
Kpn2I TCCGGA 1 cut(s) 1066
Kzo9I GATC 4 cut(s) 74, 421, 489, 906
LmnI GCTCC 2 cut(s) 188, 322
Lsp1109I GCAGC 1 cut(s) 732
LweI GCATC 2 cut(s) 36, 837
MaeI CTAG 3 cut(s) 582, 822, 1318
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 3 cut(s) 616, 766, 783
MalI GATC 4 cut(s) 76, 423, 491, 908
MboI GATC 4 cut(s) 74, 421, 489, 906
MboII GAAGA 9 cut(s) 29, 32, 531, 824, 860, 947, 950, 1047, 1301
MfeI CAATTG 1 cut(s) 1173
MhlI GDGCHC 2 cut(s) 60, 405
MlsI TGGCCA 1 cut(s) 1019
MluCI AATT 4 cut(s) 86, 176, 919, 1173
MluI ACGCGT 1 cut(s) 708
MluNI TGGCCA 1 cut(s) 1019
MlyI GAGTC 4 cut(s) 101, 510, 543, 1301
MmeI TCCRAC 3 cut(s) 152, 526, 1257
MnlI CCTC 9 cut(s) 243, 415, 553, 668, 975, 1031, 1093, 1141, 1243
Mox20I TGGCCA 1 cut(s) 1019
MroI TCCGGA 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 1019
MseI TTAA 3 cut(s) 167, 299, 795
Msp20I TGGCCA 1 cut(s) 1019
MspI CCGG 2 cut(s) 680, 1067
MspR9I CCNGG 3 cut(s) 11, 430, 1112
MunI CAATTG 1 cut(s) 1173
MvaI CCWGG 3 cut(s) 11, 430, 1112
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 55, 64, 689, 734
NdeI CATATG 2 cut(s) 203, 349
NdeII GATC 4 cut(s) 74, 421, 489, 906
NlaIII CATG 5 cut(s) 46, 503, 758, 805, 1160
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 783
PaeR7I CTCGAG 1 cut(s) 902
PagI TCATGA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 855
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 2 cut(s) 309, 722
PleI GAGTC 4 cut(s) 101, 510, 543, 1300
PpsI GAGTC 4 cut(s) 101, 510, 543, 1300
PshAI GACNNNNGTC 1 cut(s) 1201
Psp6I CCWGG 3 cut(s) 9, 428, 1110
PspGI CCWGG 3 cut(s) 9, 428, 1110
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 7 cut(s) 62, 224, 332, 477, 677, 962, 1069
SaqAI TTAA 3 cut(s) 167, 299, 795
SatI GCNGC 2 cut(s) 308, 721
Sau3AI GATC 4 cut(s) 74, 421, 489, 906
Sau96I GGNCC 7 cut(s) 62, 224, 332, 477, 677, 962, 1069
SchI GAGTC 4 cut(s) 101, 510, 543, 1301
ScrFI CCNGG 3 cut(s) 11, 430, 1112
SduI GDGCHC 2 cut(s) 60, 405
SfaNI GCATC 2 cut(s) 36, 837
SfcI CTRYAG 1 cut(s) 664
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 6 cut(s) 224, 332, 477, 677, 962, 1069
SlaI CTCGAG 1 cut(s) 902
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
SpeI ACTAGT 1 cut(s) 821
Sse9I AATT 4 cut(s) 86, 176, 919, 1173
SsiI CCGC 6 cut(s) 65, 308, 692, 728, 1130, 1241
SspI AATATT 1 cut(s) 931
SspMI CTAG 3 cut(s) 582, 822, 1318
StyD4I CCNGG 3 cut(s) 9, 428, 1110
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 138, 373, 603, 1200
TaiI ACGT 1 cut(s) 32
TaqI TCGA 9 cut(s) 115, 124, 279, 411, 648, 810, 831, 903, 909
TasI AATT 4 cut(s) 86, 176, 919, 1173
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 855
Tru1I TTAA 3 cut(s) 167, 299, 795
Tru9I TTAA 3 cut(s) 167, 299, 795
TscAI CASTG 3 cut(s) 627, 1186, 1205
TseFI GTSAC 1 cut(s) 783
TseI GCWGC 1 cut(s) 720
Tsp45I GTSAC 1 cut(s) 783
TspDTI ATGAA 6 cut(s) 99, 612, 642, 771, 865, 1223
TspGWI ACGGA 2 cut(s) 345, 1241
TspRI CASTG 3 cut(s) 627, 1186, 1205
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 6 cut(s) 224, 332, 477, 677, 962, 1069
XapI RAATTY 2 cut(s) 86, 176
XbaI TCTAGA 1 cut(s) 581
XhoI CTCGAG 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 3 cut(s) 582, 822, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.