Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

1951468 .. 1952997

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAACTCGAAGAGATAACTAGTCGCATCGACTTCTTATACCAAGAAGACAGATTCGGCATTGATACTGACTTCATCATCAAGCCAGAATATGATTATCTCGAGATCGACCAGCCAAATTATGCAAATATTGAAGAAGAAAATATGTCCTTACAAGGTGGACCTCATTTCAAAAACTTCGTGGACTTATTGAGAGATTTGTTGGCAATGGCATTGGCCAATGGTTTGCTCAGAAGAGGATTGCCCACAGCTTCCAATCTCATTCCGGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCGAGGCGGTAAAGTCATTGTGTGAGGGGTATCATGTTAAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTGTGTTTGGTGATAAGGATTCTGAAGGAAAGGCAAAGAGGGTGGTTCGTTGCTCTTGCGTTGTTATTGAGGAAGGCATATATGAGACGGAACTTCATAAAGCGGTTTTGGAGGTCTGGAAGTCTCTCCCATCAAAGTTGGAAGTGCTGGAAGAGTCTGGATTGTGTCGCCCTTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

194

Amino Acids

22.12

Weight (kDa)

4.59

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	65 - 155	6.3e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	2 cut(s)	329, 506
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	447
AgsI	TTSAA	2 cut(s)	134, 172
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	482, 531
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	161, 268
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	161, 268
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	482, 531
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	21, 583
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	161, 268
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	161, 268
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	36
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	244, 288
BseNI	ACTGG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	482, 531
BsmBI	CGTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	2 cut(s)	329, 506
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	243, 289
BspEI	TCCGGA	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	3 cut(s)	6, 229, 549
BstDEI	CTNAG	2 cut(s)	230, 297
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	482, 531
BstMBI	GATC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	385, 404
Cfr13I	GGNCC	2 cut(s)	161, 268
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	5 cut(s)	85, 115, 218, 251, 283
CviKI_1	RGCY	5 cut(s)	85, 115, 218, 251, 283
DdeI	CTNAG	2 cut(s)	230, 297
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	6, 229, 549
EarI	CTCTTC	3 cut(s)	6, 229, 549
Eco47I	GGWCC	2 cut(s)	161, 268
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	1 cut(s)	359
FatI	CATG	1 cut(s)	355
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	21, 583
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	3 cut(s)	54, 422, 557
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	161, 184
Hpy188I	TCNGA	3 cut(s)	233, 369, 427
Hpy188III	TCNNGA	5 cut(s)	101, 103, 266, 520, 561
Hpy8I	GTNNAC	2 cut(s)	161, 184
HpyAV	CCTTC	3 cut(s)	268, 422, 470
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	230, 297
Hsp92II	CATG	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	105
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	21, 583
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	6 cut(s)	23, 59, 146, 149, 246, 566
MfeI	CAATTG	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	2 cut(s)	118, 372
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	8 cut(s)	174, 230, 292, 319, 340, 435, 466, 508
Mox20I	TGGCCA	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	54, 422
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	161, 268
SaqAI	TTAA	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	161, 268
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	5 cut(s)	160, 166, 253, 279, 519
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	161, 268
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	2 cut(s)	118, 372
SsiI	CCGC	2 cut(s)	329, 506
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	21, 583
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	5 cut(s)	9, 30, 102, 108, 324
TasI	AATT	2 cut(s)	118, 372
TfiI	GAWTC	2 cut(s)	54, 422
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	385, 404
TspDTI	ATGAA	2 cut(s)	64, 488
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	385, 404
VpaK11BI	GGWCC	2 cut(s)	161, 268
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	2 cut(s)	21, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.