Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

1975834 .. 1976550

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTCAATGTCGATACCAAGAAATGTCATTTAATCAAGCCGCCCGTTGCTCCCAAATGGGACGGACCTGTTGTATCTGCATATGGGAAACTTTACTCTATTACGGATCCATCCTGCTCATCTGTTGTGCCTGCAGAGCCCTCTTTCGAGCGATATGATCCTTACAGGTGTTGTTGGGAAACTCGGAAATCTTTTCCTTATAGTAGTAAATATTGGTCCAAACAAAGGATTGGGGGTCATGCCGTTTGTGATGGACTCATTCTGTATAATATAATCTCTCGTGATGGATTCATTAATCTGTATAATCCATTCTCTTGCTCTAGAAAATATCAAGATGAACTGTGGGCTTATGATGTAACACTGGATGAATGGCTTCCAGTCAGAGTCGAGAACACAGATTGCTATAGTTTCCGAGGACCGGCTGTATGTGCGGACAAGACTATCTATGCGTTATCAAGCAGCTTGGCGGTTATGGCACTCTCTATCACAAGGCATGAAAATCTTGTTACCTGCTCTCTAAAGTCACAGTTTGTTTGTCCAGAGTTTGGGGACTTTCGACCAGGTGTACAGAGAACGGAGCGTTTGATTTATTTGGGTGACCTGAACTTTTGTCTTGTTCAGACTGGATTTCAGTTCGGTGACATTAGATCCAGTCAATCTCTTAAAATTACCACATTTCACCTTGTGGGAGAAACCAATATCAAAATCGAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.17

Weight (kDa)

7.96

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	3 cut(s)	41, 431, 467
AclI	AACGTT	1 cut(s)	712
AclWI	GGATC	4 cut(s)	101, 114, 152, 642
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	3 cut(s)	225, 418, 545
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
AlwI	GGATC	4 cut(s)	101, 114, 152, 642
ApeKI	GCWGC	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	65, 216, 416
AsuHPI	GGTGA	3 cut(s)	608, 650, 671
AvaII	GGWCC	3 cut(s)	65, 216, 416
BamHI	GGATCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	118, 245, 278
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	561
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	132, 403
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	2 cut(s)	41, 460
BlsI	GCNGC	2 cut(s)	42, 461
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	3 cut(s)	65, 216, 416
BmgT120I	GGNCC	3 cut(s)	65, 216, 416
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 418, 545
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	4 cut(s)	366, 377, 628, 651
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	110, 370
BseLI	CCNNNNNNNGG	3 cut(s)	225, 418, 545
BseNI	ACTGG	4 cut(s)	366, 377, 628, 651
BseXI	GCAGC	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	74, 563
BslI	CCNNNNNNNGG	3 cut(s)	225, 418, 545
BsmFI	GGGAC	2 cut(s)	74, 563
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	106, 157, 647
BspACI	CCGC	3 cut(s)	41, 431, 467
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	4 cut(s)	101, 114, 152, 642
BsrFI	RCCGGY	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	565
BsrI	ACTGG	4 cut(s)	366, 377, 628, 651
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	3 cut(s)	106, 157, 647
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	342, 528
BstAUI	TGTACA	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	2 cut(s)	110, 370
BstKTI	GATC	3 cut(s)	109, 160, 650
BstMBI	GATC	3 cut(s)	106, 157, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 428, 473
BstNI	CCWGG	1 cut(s)	561
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	132, 403
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	106, 647
BstYI	RGATCY	2 cut(s)	106, 647
BtsCI	GGATG	2 cut(s)	110, 370
BtsIMutI	CAGTG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	65, 216, 416
CsiI	ACCWGGT	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	239, 494
CviJI	RGCY	6 cut(s)	40, 139, 347, 373, 422, 462
CviKI_1	RGCY	6 cut(s)	40, 139, 347, 373, 422, 462
CviQI	GTAC	1 cut(s)	566
DpnI	GATC	3 cut(s)	108, 159, 649
DpnII	GATC	3 cut(s)	106, 157, 647
DraIII	CACNNNGTG	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	65, 216, 416
Eco91I	GGTNACC	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	242, 497
FaqI	GGGAC	2 cut(s)	74, 563
FatI	CATG	2 cut(s)	238, 493
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	41, 460
FokI	GGATG	2 cut(s)	97, 377
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	41, 460
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	41, 460
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	2 cut(s)	242, 497
HinfI	GANTC	3 cut(s)	255, 288, 384
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	3 cut(s)	608, 650, 671
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	4 cut(s)	186, 383, 413, 621
Hpy188III	TCNNGA	5 cut(s)	281, 321, 332, 388, 539
Hpy8I	GTNNAC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	342, 528
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	2 cut(s)	80, 134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 428, 473
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	2 cut(s)	242, 497
Kzo9I	GATC	3 cut(s)	106, 157, 647
LmnI	GCTCC	2 cut(s)	55, 577
Lsp1109I	GCAGC	1 cut(s)	471
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	5 cut(s)	355, 505, 522, 596, 638
MalI	GATC	3 cut(s)	108, 159, 649
MboI	GATC	3 cut(s)	106, 157, 647
MflI	RGATCY	2 cut(s)	106, 647
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	666
MlyI	GAGTC	2 cut(s)	249, 393
MnlI	CCTC	2 cut(s)	151, 407
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	32, 294, 663, 715
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	136, 428, 473
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	3 cut(s)	106, 157, 647
NlaIII	CATG	2 cut(s)	242, 497
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	522, 596, 638
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	42, 461
PleI	GAGTC	2 cut(s)	249, 392
PpsI	GAGTC	2 cut(s)	249, 392
PshBI	ATTAAT	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	65, 216, 416
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	106, 647
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	32, 294, 663, 715
SatI	GCNGC	2 cut(s)	41, 460
Sau3AI	GATC	3 cut(s)	106, 157, 647
Sau96I	GGNCC	3 cut(s)	65, 216, 416
SchI	GAGTC	2 cut(s)	249, 393
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	8 cut(s)	70, 170, 464, 512, 565, 603, 684, 715
SexAI	ACCWGGT	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	132, 403
SinI	GGWCC	3 cut(s)	65, 216, 416
Sse9I	AATT	1 cut(s)	666
SsiI	CCGC	3 cut(s)	41, 431, 467
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	342, 528
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	5 cut(s)	12, 147, 387, 556, 708
TasI	AATT	1 cut(s)	666
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	4 cut(s)	32, 294, 663, 715
Tru9I	TTAA	4 cut(s)	32, 294, 663, 715
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	3 cut(s)	522, 596, 638
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	3 cut(s)	522, 596, 638
TspDTI	ATGAA	4 cut(s)	280, 351, 381, 510
TspGWI	ACGGA	3 cut(s)	78, 119, 590
TspRI	CASTG	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	65, 216, 416
VspI	ATTAAT	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.