Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

2051381 .. 2052375

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCCTTACAAGGTGGACCTCATTTCAAAAACTTCGTGGACTTATTGAGAGATTTGTTGGCAATGGCATTGGCCAATGGTTTGCTCAGAAGAGGATTGCCCACAGCTTCCAATCTCATTCCGGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCAAGGCGGTAAAGTCATTGTGTGAGGGGTATCATGTTGAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTGTGTCACAGTTTGGTGATAAGGATTCTGAAGGAAAGGCAAAAAGGGTGCTATGTCTCTGGTGGATTTGGGGTCAAATCCATCCAAAGTTTGATGATCTCTCAGATACATTCAACTGCCTAGGTTTTAGTTTTCTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

133

Amino Acids

14.95

Weight (kDa)

5.84

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	17 - 89	3.1e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	28, 373
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	72
AspA2I	CCTAGG	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	17, 124
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	17, 124
AvrII	CCTAGG	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	380
BlnI	CCTAGG	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	17, 124
BmgT120I	GGNCC	2 cut(s)	17, 124
BmrFI	CCNGG	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	175, 340
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	100, 144, 375
BseNI	ACTGG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	74
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	99, 145, 374
BspEI	TCCGGA	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	255, 270
Bst6I	CTCTTC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	86, 153, 361
BstF5I	GGATG	2 cut(s)	175, 340
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	175, 340
BtsIMutI	CAGTG	2 cut(s)	241, 260
Cfr13I	GGNCC	2 cut(s)	17, 124
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	74, 107, 139
CviKI_1	RGCY	3 cut(s)	74, 107, 139
DdeI	CTNAG	3 cut(s)	86, 153, 361
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	17, 124
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	136, 213, 313
FatI	CATG	1 cut(s)	211
FokI	GGATG	2 cut(s)	182, 327
FspBI	CTAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	17, 40
Hpy188I	TCNGA	4 cut(s)	89, 225, 289, 364
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	17, 40
HpyAV	CCTTC	2 cut(s)	124, 284
HpyCH4III	ACNGT	2 cut(s)	255, 270
HpyF3I	CTNAG	3 cut(s)	86, 153, 361
Hsp92II	CATG	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	135, 140, 152, 179, 247, 304
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	102
MfeI	CAATTG	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	4 cut(s)	30, 86, 148, 196
Mox20I	TGGCCA	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	284
PshAI	GACNNNNGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	17, 124
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	2 cut(s)	17, 124
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	16, 22, 109, 135, 385, 400
SinI	GGWCC	2 cut(s)	17, 124
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	255, 270
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	2 cut(s)	241, 260
TseFI	GTSAC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	264
TspRI	CASTG	2 cut(s)	241, 260
VpaK11BI	GGWCC	2 cut(s)	17, 124
XmaJI	CCTAGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.