RLG00000005309

40S ribosomal protein S12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004882
Physical Location & Seq
Forward (+)
66706335 .. 66713838
7504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005309

Sequence Viewer

Length: 1101 bp
ATGTCTCTTTATATCATGATGCAATATGAGCACGGCCCGCACTTCGGATCGTTGTATGAATTTAATTTATGTAAGCAAGACTCCTTTCGACCTTTAGCATGGTTCAGGGAAAAGGATATTAGCCTTCCATTAAGTTGGAAATCTTGCTCCTTGGATACCAACGACATATGTCTATTGCCAGATAGTGGTCCTTTCCCTCCTGATGATGTGGTGAACCCCTTGTCTGGATATTTGTTCAATGTCGATACCAAGAAATGTCATTTAATCAAGCCGCCCGTTGCTCCCAAATGGGAAGGACCTGTTGTATCTGCATATGGGAAACTTTACCCTATTACGGATCCATCCTGCTCATCTGTTGTGCCAGAGCCCTCTTTCGAGCGATATGATCCTTACAGGTGTTATTGGGAAACTCGGAAATCTTTTCCTTATAGTAAAGATTGGTCCAAACTCGAAAATCTTTGCCTTGTTCAGACTGGATTTCGTACTTTTAAATGCATTGAACCAGAAGAGATGGCTAGTCGCATCAACCTCTTAAACCAAGAAGACAGAAACGGCAATGATACTGACTTCATCATAATGCCTGTTGACTTCATCTTCAAGCCAGAATATGATTATCTCGAGATCGACCAGCCAAATTATGCAAATATTGAAGAAGAAAATATGTCCTTACAAGGTGGACCTCATTTCAAAAACTTCGTGGACTTATTGAGAGATTTGTTTTCAATGGCATTGGCCAATGGTTTGCTCAGAAGAGGACTTCCCACAGCTTCCAATCTCATTCCTGACCAGAAGGTATGGCTGTGTGTTTTTGCTGAGGACAGCAACCAGGATGATTTTGTCGGGGCGGTAAAGTCATTGTGTGAGGAGTATCATGTTAAGTATCTGACAATTGCCAGTGCTAAAACTCTTGGACAGTGGTCTGTGTTTGGTAATAAGGATTCTGAAGGAAAGGCAAAGAGGGTGGTTCGTTGCTCTTGCGTTGTTATTGAGGAAGGCATATATGAGACGGAACTTCATAAAGCAGTTTTGGAGGTCTGGAAGTCTCTCCCATCAAAGCTGGAAGTGCTGGAAGAGTCTGGATTGTGTCGCCCTTTTGTCTAG

Protein Analysis

367

Amino Acids

41.96

Weight (kDa)

4.96

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 241 - 327 1.9e-08 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AciI CCGC 3 cut(s) 38, 272, 845
AclWI GGATC 4 cut(s) 55, 332, 345, 380
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 963
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 4 cut(s) 44, 185, 224, 334
AgsI TTSAA 6 cut(s) 238, 500, 598, 650, 688, 723
AjnI CCWGG 1 cut(s) 825
AluBI AGCT 2 cut(s) 767, 1057
AluI AGCT 2 cut(s) 767, 1057
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 3 cut(s) 9, 998, 1047
AlwI GGATC 4 cut(s) 55, 332, 345, 380
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 2 cut(s) 34, 732
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 5 cut(s) 35, 188, 296, 441, 677
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 4 cut(s) 188, 296, 441, 677
BalI TGGCCA 1 cut(s) 734
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 813
BccI CCATC 3 cut(s) 349, 505, 1057
BceAI ACGGC 2 cut(s) 49, 568
BciT130I CCWGG 1 cut(s) 827
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 9, 998, 1047
BfaI CTAG 2 cut(s) 516, 1099
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 827
Bme18I GGWCC 4 cut(s) 188, 296, 441, 677
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 5 cut(s) 35, 188, 296, 441, 677
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 827
BmsI GCATC 2 cut(s) 9, 531
BoxI GACNNNNGTC 2 cut(s) 168, 916
BpiI GAAGAC 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 813
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 185, 224, 334
Bse1I ACTGG 2 cut(s) 478, 894
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 341, 835
BseLI CCNNNNNNNGG 4 cut(s) 44, 185, 224, 334
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 760, 804
BseNI ACTGG 2 cut(s) 478, 894
BseRI GAGGAG 1 cut(s) 878
BshFI GGCC 2 cut(s) 36, 734
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 617
BslI CCNNNNNNNGG 4 cut(s) 44, 185, 224, 334
BsmAI GTCTC 3 cut(s) 9, 998, 1047
BsmBI CGTCTC 1 cut(s) 998
BsnI GGCC 2 cut(s) 36, 734
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 33, 369
Bsp143I GATC 4 cut(s) 47, 337, 385, 621
BspACI CCGC 3 cut(s) 38, 272, 845
BspANI GGCC 2 cut(s) 36, 734
BspCNI CTCAG 2 cut(s) 759, 805
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 4 cut(s) 55, 332, 345, 380
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 2 cut(s) 478, 894
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 4 cut(s) 47, 337, 385, 621
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 1 cut(s) 915
Bst6I CTCTTC 3 cut(s) 501, 745, 1065
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 746, 813
BstF5I GGATG 2 cut(s) 341, 835
BstKTI GATC 4 cut(s) 50, 340, 388, 624
BstMAI GTCTC 3 cut(s) 9, 998, 1047
BstMBI GATC 4 cut(s) 47, 337, 385, 621
BstMWI GCNNNNNNNGC 3 cut(s) 28, 37, 1063
BstNI CCWGG 1 cut(s) 827
BstPAI GACNNNNGTC 2 cut(s) 168, 916
BstSCI CCNGG 1 cut(s) 825
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 2 cut(s) 36, 734
BtsCI GGATG 2 cut(s) 341, 835
BtsIMutI CAGTG 2 cut(s) 901, 920
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 5 cut(s) 35, 188, 296, 441, 677
Csp6I GTAC 1 cut(s) 483
CspCI CAANNNNNGTGG 2 cut(s) 942, 977
CviAII CATG 3 cut(s) 16, 99, 872
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 2 cut(s) 746, 813
DpnI GATC 4 cut(s) 49, 339, 387, 623
DpnII GATC 4 cut(s) 47, 337, 385, 621
DraI TTTAAA 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 501, 745, 1065
EarI CTCTTC 3 cut(s) 501, 745, 1065
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 4 cut(s) 188, 296, 441, 677
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 998
FaeI CATG 3 cut(s) 19, 102, 875
FatI CATG 3 cut(s) 15, 98, 871
FauI CCCGC 1 cut(s) 45
FauNDI CATATG 2 cut(s) 167, 313
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 328, 842
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 2 cut(s) 516, 1099
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 2 cut(s) 36, 734
Hin1II CATG 3 cut(s) 19, 102, 875
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 3 cut(s) 80, 938, 1073
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 4 cut(s) 214, 586, 677, 700
Hpy188I TCNGA 6 cut(s) 47, 414, 471, 749, 885, 943
Hpy188III TCNNGA 8 cut(s) 16, 200, 225, 617, 619, 782, 1036, 1077
Hpy8I GTNNAC 4 cut(s) 214, 586, 677, 700
HpyAV CCTTC 5 cut(s) 134, 287, 784, 938, 986
HpyCH4III ACNGT 1 cut(s) 915
HpyCH4V TGCA 4 cut(s) 22, 311, 495, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 37, 1063
HpyF3I CTNAG 2 cut(s) 746, 813
Hsp92II CATG 3 cut(s) 19, 102, 875
Kzo9I GATC 4 cut(s) 47, 337, 385, 621
LmnI GCTCC 2 cut(s) 152, 286
LweI GCATC 2 cut(s) 9, 531
MaeI CTAG 2 cut(s) 516, 1099
MalI GATC 4 cut(s) 49, 339, 387, 623
MboI GATC 4 cut(s) 47, 337, 385, 621
MboII GAAGA 7 cut(s) 518, 554, 586, 662, 665, 762, 1082
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 33, 369
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 4 cut(s) 59, 64, 634, 888
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 2 cut(s) 74, 1082
MmeI TCCRAC 1 cut(s) 116
Mox20I TGGCCA 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 497
MscI TGGCCA 1 cut(s) 734
MseI TTAA 6 cut(s) 63, 131, 263, 489, 533, 876
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 734
MspR9I CCNGG 1 cut(s) 827
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 827
MwoI GCNNNNNNNGC 3 cut(s) 28, 37, 1063
NdeI CATATG 2 cut(s) 167, 313
NdeII GATC 4 cut(s) 47, 337, 385, 621
NlaIII CATG 3 cut(s) 19, 102, 875
NlaIV GGNNCC 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 617
PagI TCATGA 1 cut(s) 15
PfeI GAWTC 1 cut(s) 938
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 74, 1081
PpsI GAGTC 2 cut(s) 74, 1081
PpuMI RGGWCCY 1 cut(s) 296
PshAI GACNNNNGTC 2 cut(s) 168, 916
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 5 cut(s) 35, 188, 296, 441, 677
PspPPI RGGWCCY 1 cut(s) 296
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 6 cut(s) 63, 131, 263, 489, 533, 876
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 47, 337, 385, 621
Sau96I GGNCC 5 cut(s) 35, 188, 296, 441, 677
SchI GAGTC 2 cut(s) 74, 1082
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 2 cut(s) 33, 369
SfaNI GCATC 2 cut(s) 9, 531
Sfr274I CTCGAG 1 cut(s) 617
SinI GGWCC 4 cut(s) 188, 296, 441, 677
SlaI CTCGAG 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 4 cut(s) 59, 64, 634, 888
SsiI CCGC 3 cut(s) 38, 272, 845
SspI AATATT 1 cut(s) 646
SspMI CTAG 2 cut(s) 516, 1099
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 915
TaqI TCGA 6 cut(s) 88, 243, 375, 450, 618, 624
TasI AATT 4 cut(s) 59, 64, 634, 888
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 938
Tru1I TTAA 6 cut(s) 63, 131, 263, 489, 533, 876
Tru9I TTAA 6 cut(s) 63, 131, 263, 489, 533, 876
TscAI CASTG 2 cut(s) 901, 920
TspDTI ATGAA 4 cut(s) 72, 559, 580, 1004
TspGWI ACGGA 2 cut(s) 350, 1022
TspRI CASTG 2 cut(s) 901, 920
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 4 cut(s) 188, 296, 441, 677
XapI RAATTY 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 617
XspI CTAG 2 cut(s) 516, 1099
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.