Rmu_sc0002357.1_g000019

40S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002357.1
Physical Location & Seq
Reverse (-)
59695 .. 63335
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002357.1_g000019.1.cds

Sequence Viewer

Length: 1485 bp
atgataaaccaggcagaagaagaagcaatgtgtctttatatcatgatcgaatatggggacggcccgcactttggatcgttgtatgaatttaatatatgtaagcaagactactttcgacctttcgcacagttcagggctgaggatgttagccttccgttaagttggaaattttgctccttggataccaacaacatatgtctattgccagatagtggtcctttatctcctaatgatgtggtgaaccccttgtctggatatatgttcaatgttgataccaataaatgtcatttaatcaagccgcccgttgctcccaaatgggaaggacctgttgtatctgcatgtgggaaactttactctattacggatccatgctgctcatttgatgtgccagagccctctttcgagcgatatgatccttataggtgttgttgggaaactcggaaatcttttccttatggtaaaaattgttccgaacaaaggattgggggtcatgccgtttgtgatggactcatcctgtataatataatcattccaggggataatccattctttttctctagaaaatatcaagatgaaatgtgggcttatgatgtaacactggatgaatggcttccagttagggtcgagaacacagattgctatagtttccgaggaccggctgtatgtgtggacaagactatctatgcgttatcaagcagcttggcggttatggcactctctatcacaaggcatgaaaatcttgttacctgctctctaaagtcacagtttgtttgtccagagtttgggaactttcgaccaggtgtacagagaatggagcgtttgatttatttgggtgacctgaacttttgtcttgttcagactagatttcactatgacagtagatccagtcaatctcttaaaattaccacatttcaccttgtgggagaaaccaatatcaaaatcgaacgttcattcatttatgaggtgcctcttgagggtcataagagattcacaattggacattgctttatccatacttttaaacgcattgaactagaagagttggctagtcgcatcgacttcttaaaccaagaatacagattcggccttcatactgaattcttcatcaagccaggtggacctcatttcaaaaccttcgtggacttgttgaaagatttgttggcaatggcattggccaatggattgctcagaagaggaattcccacagcttccaatctcattccggaccagaaggtatggctgtgtgtttttgctgaggacagcaaccaggatgatgttgtcaaggcggtaaagtcattgtgtgaggggtatcatgttaagtatctgacaattgccagtgctaaaactcttggacagtggaaggcatatatgagacggaacttcataaagcagttttggaagtctgaaagtctctcccatcaaagctggaagtgctggaagagtctggacagtgtcgccctgttgtcgggtcaagggcttctttag

Protein Analysis

494

Amino Acids

56.7

Weight (kDa)

6.37

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 964
AccB7I CCANNNNNTGG 2 cut(s) 212, 782
AccIII TCCGGA 1 cut(s) 1222
AciI CCGC 4 cut(s) 65, 299, 704, 1286
AclI AACGTT 1 cut(s) 946
AclWI GGATC 5 cut(s) 82, 359, 372, 407, 876
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 4 cut(s) 86, 167, 1097, 1197
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 1 cut(s) 804
AfiI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 477, 655, 782, 974, 1465
AgsI TTSAA 4 cut(s) 265, 1031, 1129, 1150
AjnI CCWGG 5 cut(s) 9, 532, 796, 1111, 1266
AjuI GAANNNNNNNTTGG 4 cut(s) 465, 497, 1142, 1174
AluBI AGCT 3 cut(s) 699, 1208, 1425
AluI AGCT 3 cut(s) 699, 1208, 1425
Alw26I GTCTC 2 cut(s) 1366, 1415
AlwI GGATC 5 cut(s) 82, 359, 372, 407, 876
Aor13HI TCCGGA 1 cut(s) 1222
AoxI GGCC 3 cut(s) 61, 1084, 1173
ApeKI GCWGC 2 cut(s) 372, 696
ApoI RAATTY 4 cut(s) 86, 167, 1097, 1197
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 6 cut(s) 62, 215, 323, 653, 1118, 1225
AsuHPI GGTGA 3 cut(s) 250, 845, 905
AvaII GGWCC 5 cut(s) 215, 323, 653, 1118, 1225
BalI TGGCCA 1 cut(s) 1175
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 964
BanII GRGCYC 1 cut(s) 396
BbvCI CCTCAGC 2 cut(s) 138, 1254
BbvI GCAGC 2 cut(s) 359, 708
BccI CCATC 2 cut(s) 497, 1425
BceAI ACGGC 2 cut(s) 76, 479
BciT130I CCWGG 5 cut(s) 11, 534, 798, 1113, 1268
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 1366, 1415
BfaI CTAG 4 cut(s) 558, 861, 1034, 1047
BfmI CTRYAG 1 cut(s) 640
BfuAI ACCTGC 1 cut(s) 755
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 3 cut(s) 299, 373, 697
BlsI GCNGC 3 cut(s) 300, 374, 698
Bme1390I CCNGG 5 cut(s) 11, 534, 798, 1113, 1268
Bme18I GGWCC 5 cut(s) 215, 323, 653, 1118, 1225
BmgT120I GGNCC 6 cut(s) 62, 215, 323, 653, 1118, 1225
BmiI GGNNCC 2 cut(s) 366, 966
BmrFI CCNGG 5 cut(s) 11, 534, 798, 1113, 1268
BmsI GCATC 1 cut(s) 1062
Bpu10I CCTNAGC 2 cut(s) 138, 1254
BpuEI CTTGAG 1 cut(s) 992
BsaJI CCNNGG 3 cut(s) 177, 533, 649
BsaWI WCCGGW 1 cut(s) 1222
Bsc4I CCNNNNNNNGG 8 cut(s) 71, 212, 251, 477, 655, 782, 974, 1465
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 4 cut(s) 603, 614, 885, 1335
Bse3DI GCAATG 3 cut(s) 33, 1000, 1170
BseAI TCCGGA 1 cut(s) 1222
BseBI CCWGG 5 cut(s) 11, 534, 798, 1113, 1268
BseDI CCNNGG 3 cut(s) 177, 533, 649
BseGI GGATG 4 cut(s) 148, 510, 607, 1276
BseLI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 477, 655, 782, 974, 1465
BseMI GCAATG 3 cut(s) 33, 1000, 1170
BseMII CTCAG 3 cut(s) 129, 1201, 1245
BseNI ACTGG 4 cut(s) 603, 614, 885, 1335
BseXI GCAGC 2 cut(s) 359, 708
BshFI GGCC 3 cut(s) 63, 1086, 1175
BshNI GGYRCC 1 cut(s) 964
BsiSI CCGG 2 cut(s) 656, 1223
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 8 cut(s) 71, 212, 251, 477, 655, 782, 974, 1465
BsmAI GTCTC 2 cut(s) 1366, 1415
BsmBI CGTCTC 1 cut(s) 1366
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 3 cut(s) 63, 1086, 1175
Bsp1286I GDGCHC 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 1222
Bsp1407I TGTACA 1 cut(s) 802
Bsp143I GATC 5 cut(s) 45, 74, 364, 412, 881
BspACI CCGC 4 cut(s) 65, 299, 704, 1286
BspANI GGCC 3 cut(s) 63, 1086, 1175
BspCNI CTCAG 3 cut(s) 130, 1200, 1246
BspEI TCCGGA 1 cut(s) 1222
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 366, 966
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 5 cut(s) 82, 359, 372, 407, 876
BspT107I GGYRCC 1 cut(s) 964
BsrDI GCAATG 3 cut(s) 33, 1000, 1170
BsrFI RCCGGY 1 cut(s) 655
BsrGI TGTACA 1 cut(s) 802
BsrI ACTGG 4 cut(s) 603, 614, 885, 1335
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 177, 533, 649
BssMI GATC 5 cut(s) 45, 74, 364, 412, 881
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 5 cut(s) 11, 534, 798, 1113, 1268
Bst4CI ACNGT 5 cut(s) 129, 765, 878, 1356, 1451
Bst6I CTCTTC 3 cut(s) 1032, 1186, 1433
BstAUI TGTACA 1 cut(s) 802
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 3 cut(s) 138, 1187, 1254
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 4 cut(s) 148, 510, 607, 1276
BstKTI GATC 5 cut(s) 48, 77, 367, 415, 884
BstMAI GTCTC 2 cut(s) 1366, 1415
BstMBI GATC 5 cut(s) 45, 74, 364, 412, 881
BstMWI GCNNNNNNNGC 2 cut(s) 710, 1431
BstNI CCWGG 5 cut(s) 11, 534, 798, 1113, 1268
BstNSI RCATGY 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 5 cut(s) 9, 532, 796, 1111, 1266
BstSFI CTRYAG 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 359, 708
BstX2I RGATCY 2 cut(s) 364, 881
BstYI RGATCY 2 cut(s) 364, 881
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 3 cut(s) 63, 1086, 1175
BtsCI GGATG 4 cut(s) 148, 510, 607, 1276
BtsIMutI CAGTG 4 cut(s) 596, 1342, 1361, 1456
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 6 cut(s) 62, 215, 323, 653, 1118, 1225
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 6 cut(s) 43, 339, 369, 491, 731, 1313
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 3 cut(s) 138, 1187, 1254
DpnI GATC 5 cut(s) 47, 76, 366, 414, 883
DpnII GATC 5 cut(s) 45, 74, 364, 412, 881
DraI TTTAAA 1 cut(s) 1021
DraIII CACNNNGTG 1 cut(s) 919
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 3 cut(s) 1032, 1186, 1433
EarI CTCTTC 3 cut(s) 1032, 1186, 1433
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 5 cut(s) 215, 323, 653, 1118, 1225
Eco91I GGTNACC 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 833
EcoRI GAATTC 2 cut(s) 1097, 1197
EcoRII CCWGG 5 cut(s) 9, 532, 796, 1111, 1266
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 1366
FaeI CATG 6 cut(s) 46, 342, 372, 494, 734, 1316
FalI AAGNNNNNCTT 1 cut(s) 1464
FaqI GGGAC 1 cut(s) 71
FatI CATG 6 cut(s) 42, 338, 368, 490, 730, 1312
FauI CCCGC 1 cut(s) 72
FauNDI CATATG 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 299, 373, 697
FokI GGATG 4 cut(s) 155, 497, 614, 1283
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 299, 373, 697
FspBI CTAG 4 cut(s) 558, 861, 1034, 1047
GluI GCNGC 3 cut(s) 299, 373, 697
HaeIII GGCC 3 cut(s) 63, 1086, 1175
HapII CCGG 2 cut(s) 656, 1223
Hin1II CATG 6 cut(s) 46, 342, 372, 494, 734, 1316
HinfI GANTC 4 cut(s) 507, 987, 1080, 1441
HpaII CCGG 2 cut(s) 656, 1223
HphI GGTGA 3 cut(s) 250, 845, 905
Hpy166II GTNNAC 5 cut(s) 241, 670, 803, 1118, 1141
Hpy188I TCNGA 7 cut(s) 441, 472, 650, 858, 1190, 1326, 1405
Hpy188III TCNNGA 9 cut(s) 43, 252, 558, 569, 625, 776, 971, 1223, 1445
Hpy8I GTNNAC 5 cut(s) 241, 670, 803, 1118, 1141
HpyAV CCTTC 6 cut(s) 161, 314, 1097, 1144, 1225, 1354
HpyCH4III ACNGT 5 cut(s) 129, 765, 878, 1356, 1451
HpyCH4IV ACGT 1 cut(s) 946
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 1431
HpyF3I CTNAG 3 cut(s) 138, 1187, 1254
HpySE526I ACGT 1 cut(s) 946
Hsp92II CATG 6 cut(s) 46, 342, 372, 494, 734, 1316
Kpn2I TCCGGA 1 cut(s) 1222
Kzo9I GATC 5 cut(s) 45, 74, 364, 412, 881
LmnI GCTCC 3 cut(s) 179, 313, 814
Lsp1109I GCAGC 2 cut(s) 359, 708
LweI GCATC 1 cut(s) 1062
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 4 cut(s) 558, 861, 1034, 1047
MaeII ACGT 1 cut(s) 946
MaeIII GTNAC 4 cut(s) 592, 742, 759, 833
MalI GATC 5 cut(s) 47, 76, 366, 414, 883
MboI GATC 5 cut(s) 45, 74, 364, 412, 881
MboII GAAGA 6 cut(s) 29, 32, 1049, 1093, 1203, 1450
MfeI CAATTG 2 cut(s) 993, 1329
MflI RGATCY 2 cut(s) 364, 881
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 1175
MluCI AATT 8 cut(s) 86, 167, 463, 900, 993, 1097, 1197, 1329
MluNI TGGCCA 1 cut(s) 1175
MlyI GAGTC 2 cut(s) 501, 1450
MmeI TCCRAC 1 cut(s) 143
Mox20I TGGCCA 1 cut(s) 1175
MroI TCCGGA 1 cut(s) 1222
MroXI GAANNNNTTC 1 cut(s) 609
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 7 cut(s) 90, 158, 290, 897, 1020, 1064, 1317
Msp20I TGGCCA 1 cut(s) 1175
MspI CCGG 2 cut(s) 656, 1223
MspR9I CCNGG 5 cut(s) 11, 534, 798, 1113, 1268
MunI CAATTG 2 cut(s) 993, 1329
MvaI CCWGG 5 cut(s) 11, 534, 798, 1113, 1268
MwoI GCNNNNNNNGC 2 cut(s) 710, 1431
NdeI CATATG 1 cut(s) 194
NdeII GATC 5 cut(s) 45, 74, 364, 412, 881
NlaIII CATG 6 cut(s) 46, 342, 372, 494, 734, 1316
NlaIV GGNNCC 2 cut(s) 366, 966
NmuCI GTSAC 2 cut(s) 759, 833
NspI RCATGY 1 cut(s) 342
PagI TCATGA 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 987, 1080
PflFI GACNNNGTC 1 cut(s) 1451
PflMI CCANNNNNTGG 2 cut(s) 212, 782
PkrI GCNGC 3 cut(s) 300, 374, 698
PleI GAGTC 2 cut(s) 501, 1449
PpsI GAGTC 2 cut(s) 501, 1449
PpuMI RGGWCCY 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 946
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 5 cut(s) 9, 532, 796, 1111, 1266
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 5 cut(s) 9, 532, 796, 1111, 1266
PspN4I GGNNCC 2 cut(s) 366, 966
PspPI GGNCC 6 cut(s) 62, 215, 323, 653, 1118, 1225
PspPPI RGGWCCY 1 cut(s) 323
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PsuI RGATCY 2 cut(s) 364, 881
PsyI GACNNNGTC 1 cut(s) 1451
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
SaqAI TTAA 7 cut(s) 90, 158, 290, 897, 1020, 1064, 1317
SatI GCNGC 3 cut(s) 299, 373, 697
Sau3AI GATC 5 cut(s) 45, 74, 364, 412, 881
Sau96I GGNCC 6 cut(s) 62, 215, 323, 653, 1118, 1225
SchI GAGTC 2 cut(s) 501, 1450
ScrFI CCNGG 5 cut(s) 11, 534, 798, 1113, 1268
SduI GDGCHC 1 cut(s) 396
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 1 cut(s) 1062
SfcI CTRYAG 1 cut(s) 640
SinI GGWCC 5 cut(s) 215, 323, 653, 1118, 1225
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
Sse9I AATT 8 cut(s) 86, 167, 463, 900, 993, 1097, 1197, 1329
SsiI CCGC 4 cut(s) 65, 299, 704, 1286
SspMI CTAG 4 cut(s) 558, 861, 1034, 1047
StyD4I CCNGG 5 cut(s) 9, 532, 796, 1111, 1266
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 5 cut(s) 129, 765, 878, 1356, 1451
TaiI ACGT 1 cut(s) 949
TaqI TCGA 7 cut(s) 48, 115, 402, 624, 793, 942, 1056
TasI AATT 8 cut(s) 86, 167, 463, 900, 993, 1097, 1197, 1329
TatI WGTACW 1 cut(s) 802
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 2 cut(s) 987, 1080
Tru1I TTAA 7 cut(s) 90, 158, 290, 897, 1020, 1064, 1317
Tru9I TTAA 7 cut(s) 90, 158, 290, 897, 1020, 1064, 1317
TscAI CASTG 4 cut(s) 603, 1342, 1361, 1456
TseFI GTSAC 2 cut(s) 759, 833
TseI GCWGC 2 cut(s) 372, 696
Tsp45I GTSAC 2 cut(s) 759, 833
TspDTI ATGAA 9 cut(s) 99, 588, 618, 747, 939, 943, 1079, 1093, 1372
TspGWI ACGGA 3 cut(s) 144, 377, 1390
TspRI CASTG 4 cut(s) 603, 1342, 1361, 1456
Tth111I GACNNNGTC 1 cut(s) 1451
Van91I CCANNNNNTGG 2 cut(s) 212, 782
VpaK11BI GGWCC 5 cut(s) 215, 323, 653, 1118, 1225
XapI RAATTY 4 cut(s) 86, 167, 1097, 1197
XbaI TCTAGA 1 cut(s) 557
XceI RCATGY 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 558, 861, 1034, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.