RLG00000010024

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004882
Physical Location & Seq
Reverse (-)
61851834 .. 61855248
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010024

Sequence Viewer

Length: 960 bp
ATGGTTGAAGAGAAAGATGAGCCTGATAAGGTTGATGAGCAGACTCTGATGGTTGAAGAGAAAGATGGCTCTCATGGTGATATGGAGGAGACAGGGCAGGGGCAGAACCAGACTGTGCCGTTTCAAGGTGTCGGTGGATATAGTGGCTGGCTGGAATACAATTACGATCAATCCAAGGGGTTTTATGATGGGGAGCTCGGCTTGAATGATGGAGGAAGAAAAGTGCCTGTTTCCTTTATCCCCTTCCAAGACTTGGAAACAGCAAGGAATGCATATCACACAACTTTTAAAGTGGCGCACGAACGGGTTCTTAAGCCTTGGTTCTACTTCCACTGTGCTGCTATAGGTCAAGACTTGAGACAAATTCGGGAGCTAGGAGAGGCTGTTGTGCAGATGCAAATGTCTAATGCTACTCATAGTGCACTCCATGAGAGCTCTAGTTTTGTTTTATGCAATGATGAAGTGAAATTAGTGAAGATTGATGGAAATTTGGAGAACGTGGAACAGAATATTCGGTATCGGAGATTGGTGCAAGATTTTAAGAGATTTGGACAGACCGTTCGTCAGTACTTTCTTGATCCAAGAATCATAGATTGGCAACGAAGGGACGAGTTTTTGAAAATCTTCAACTTTGCAAATATAGGGTATGATAGGCTGACCAAGATGGTGAACAGGCACCCATTTTTAATGGTAAGTGATCATCGCCGGATGAAATATTTCTCGAAGATTTGGCATACGTTATCTAGTACTACTCTCAGTCAGAGGGTGTCGCAGAGACAAGGACAAGGGCAGAGAGGCAATAGCTATGTTGGAACCAAATCAGACCAACTACTGAAGTTTCTGAGAAATGTATATGAGCATTTTTATGAACATAACATTACTGCAGAAGCGGCATATGCGGAGATTGAAAGATGGTGGTTTGGTTTGTTAGACAAAGCCCATAAGGCGGTGGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

320

Amino Acids

37.3

Weight (kDa)

6.2

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 3 cut(s) 890, 899, 947
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 2 cut(s) 363, 487
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 569, 748
AfiI CCNNNNNNNGG 3 cut(s) 125, 253, 946
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 7 cut(s) 8, 56, 125, 205, 619, 628, 908
AhdI GACNNNNNGTC 1 cut(s) 561
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 4 cut(s) 196, 373, 435, 804
AluI AGCT 4 cut(s) 196, 373, 435, 804
Alw21I GWGCWC 3 cut(s) 198, 424, 437
Alw26I GTCTC 3 cut(s) 83, 352, 769
Alw44I GTGCAC 1 cut(s) 420
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 363, 487
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
Asp700I GAANNNNTTC 3 cut(s) 306, 623, 716
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 89, 679
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 2 cut(s) 198, 437
Bbv12I GWGCWC 3 cut(s) 198, 424, 437
BbvI GCAGC 1 cut(s) 325
BccI CCATC 7 cut(s) 43, 59, 182, 203, 476, 658, 906
BceAI ACGGC 1 cut(s) 103
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 3 cut(s) 83, 352, 769
BfaI CTAG 3 cut(s) 374, 438, 744
BfmI CTRYAG 2 cut(s) 342, 882
BfrI CTTAAG 1 cut(s) 311
BglI GCCNNNNNGGC 1 cut(s) 944
BisI GCNGC 2 cut(s) 339, 891
BlsI GCNGC 2 cut(s) 340, 892
BmcAI AGTACT 2 cut(s) 569, 748
BmeRI GACNNNNNGTC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 677, 814
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 174, 317
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 253, 946
Bse3DI GCAATG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 174, 317
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 3 cut(s) 125, 253, 946
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 3 cut(s) 769, 833, 945
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 410
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 3 cut(s) 198, 424, 437
BsiSI CCGG 1 cut(s) 706
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 125, 253, 946
BsmAI GTCTC 3 cut(s) 83, 352, 769
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 274
Bsp1286I GDGCHC 3 cut(s) 198, 424, 437
Bsp143I GATC 3 cut(s) 166, 577, 697
BspACI CCGC 3 cut(s) 890, 899, 947
BspCNI CTCAG 3 cut(s) 768, 834, 946
BspLI GGNNCC 2 cut(s) 677, 814
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 1 cut(s) 675
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 174, 317
BssMI GATC 3 cut(s) 166, 577, 697
BssT1I CCWWGG 2 cut(s) 174, 317
Bst4CI ACNGT 3 cut(s) 115, 335, 559
Bst6I CTCTTC 2 cut(s) 3, 51
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 755, 842, 954
BstF5I GGATG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 3 cut(s) 169, 580, 700
BstMAI GTCTC 3 cut(s) 83, 352, 769
BstMBI GATC 3 cut(s) 166, 577, 697
BstMWI GCNNNNNNNGC 4 cut(s) 269, 890, 896, 944
BstSFI CTRYAG 2 cut(s) 342, 882
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 686
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 568, 747
CviAII CATG 2 cut(s) 74, 428
CviQI GTAC 2 cut(s) 568, 747
DdeI CTNAG 3 cut(s) 755, 842, 954
DpnI GATC 3 cut(s) 168, 579, 699
DpnII GATC 3 cut(s) 166, 577, 697
DraI TTTAAA 1 cut(s) 289
DriI GACNNNNNGTC 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 3, 51
Eam1105I GACNNNNNGTC 1 cut(s) 561
EarI CTCTTC 2 cut(s) 3, 51
Ecl136II GAGCTC 2 cut(s) 196, 435
Eco130I CCWWGG 2 cut(s) 174, 317
Eco24I GRGCYC 2 cut(s) 198, 437
Eco53kI GAGCTC 2 cut(s) 196, 435
Eco57I CTGAAG 1 cut(s) 854
EcoICRI GAGCTC 2 cut(s) 196, 435
EcoT14I CCWWGG 2 cut(s) 174, 317
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 198, 437
ErhI CCWWGG 2 cut(s) 174, 317
FaeI CATG 2 cut(s) 77, 431
FaqI GGGAC 1 cut(s) 620
FatI CATG 2 cut(s) 73, 427
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 2 cut(s) 339, 891
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 2 cut(s) 198, 437
Fsp4HI GCNGC 2 cut(s) 339, 891
FspBI CTAG 3 cut(s) 374, 438, 744
GlaI GCGC 1 cut(s) 297
GluI GCNGC 2 cut(s) 339, 891
HapII CCGG 1 cut(s) 706
HhaI GCGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 77, 431
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 2 cut(s) 43, 585
HpaII CCGG 1 cut(s) 706
HphI GGTGA 2 cut(s) 89, 679
Hpy166II GTNNAC 2 cut(s) 422, 670
Hpy188I TCNGA 5 cut(s) 48, 522, 762, 823, 843
Hpy188III TCNNGA 4 cut(s) 350, 368, 575, 721
Hpy8I GTNNAC 2 cut(s) 422, 670
HpyAV CCTTC 2 cut(s) 253, 597
HpyCH4III ACNGT 3 cut(s) 115, 335, 559
HpyCH4IV ACGT 2 cut(s) 498, 737
HpyCH4V TGCA 8 cut(s) 272, 391, 397, 422, 453, 532, 635, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 890, 896, 944
HpyF3I CTNAG 3 cut(s) 755, 842, 954
HpySE526I ACGT 2 cut(s) 498, 737
Hsp92II CATG 2 cut(s) 77, 431
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 166, 577, 697
LmnI GCTCC 2 cut(s) 193, 370
LpnPI CCDG 9 cut(s) 36, 78, 83, 122, 133, 137, 240, 658, 719
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 384
MaeI CTAG 3 cut(s) 374, 438, 744
MaeII ACGT 2 cut(s) 498, 737
MalI GATC 3 cut(s) 168, 579, 699
MboI GATC 3 cut(s) 166, 577, 697
MboII GAAGA 6 cut(s) 20, 68, 228, 487, 616, 736
MhlI GDGCHC 3 cut(s) 198, 424, 437
MluCI AATT 4 cut(s) 160, 363, 467, 487
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 790
MnlI CCTC 5 cut(s) 79, 206, 373, 756, 788
Mph1103I ATGCAT 1 cut(s) 274
MroXI GAANNNNTTC 3 cut(s) 306, 623, 716
MseI TTAA 4 cut(s) 288, 312, 540, 686
MslI CAYNNNNRTG 1 cut(s) 864
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 274
MwoI GCNNNNNNNGC 4 cut(s) 269, 890, 896, 944
NdeI CATATG 1 cut(s) 895
NdeII GATC 3 cut(s) 166, 577, 697
NlaIII CATG 2 cut(s) 77, 431
NlaIV GGNNCC 2 cut(s) 677, 814
NmeAIII GCCGAG 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 274
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 3 cut(s) 306, 623, 716
PfeI GAWTC 1 cut(s) 585
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 2 cut(s) 340, 892
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 2 cut(s) 198, 437
PspN4I GGNNCC 2 cut(s) 677, 814
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 569, 748
RsaNI GTAC 2 cut(s) 568, 747
RseI CAYNNNNRTG 1 cut(s) 864
SacI GAGCTC 2 cut(s) 198, 437
SaqAI TTAA 4 cut(s) 288, 312, 540, 686
SatI GCNGC 2 cut(s) 339, 891
Sau3AI GATC 3 cut(s) 166, 577, 697
ScaI AGTACT 2 cut(s) 569, 748
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 3 cut(s) 198, 424, 437
SetI ASST 9 cut(s) 33, 130, 198, 349, 375, 437, 501, 740, 806
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 2 cut(s) 342, 882
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 2 cut(s) 311, 355
SmoI CTYRAG 2 cut(s) 311, 355
Sse9I AATT 4 cut(s) 160, 363, 467, 487
SsiI CCGC 3 cut(s) 890, 899, 947
SspI AATATT 2 cut(s) 511, 716
SspMI CTAG 3 cut(s) 374, 438, 744
SstI GAGCTC 2 cut(s) 198, 437
StyI CCWWGG 2 cut(s) 174, 317
TaaI ACNGT 3 cut(s) 115, 335, 559
TaiI ACGT 2 cut(s) 501, 740
TaqI TCGA 1 cut(s) 722
TasI AATT 4 cut(s) 160, 363, 467, 487
TatI WGTACW 2 cut(s) 567, 746
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 4 cut(s) 288, 312, 540, 686
Tru9I TTAA 4 cut(s) 288, 312, 540, 686
TscAI CASTG 1 cut(s) 338
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 474, 725, 882
TspRI CASTG 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 253
Vha464I CTTAAG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 420
XapI RAATTY 2 cut(s) 363, 487
XmnI GAANNNNTTC 3 cut(s) 306, 623, 716
XspI CTAG 3 cut(s) 374, 438, 744
ZrmI AGTACT 2 cut(s) 569, 748
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.