Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

56519848 .. 56521850

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0429200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCAATGTCAAAGAGGTCCAAACCGGAGAAGACCCACATGCCCCAACGTCAGCAGCACCCATCATTTATGCGAATTGACAAACAAGAGAGGCAGCAACAACCCAAAGACCGAAGCTTTCAGGCACAAGACGTATGTAAGCAGCAGAAAATGGGTTCTTTTCCAGTCCCGGACGAGATTGCCCTCAGAATTGCTTCGTTACTTGAGGTGTGGGATTTGTGTGCGTTGGCTTGTTGTTGTAGTTGTTGGAAGGAGCTTTGTGGGTCTGATTGCCTATGGGAGTCTCTAGCAAAAAAGAGATGGGCTTCTCTGGAATTCTCAGACGAGTCTGAGTCTGAGTCTTCATCTTCCACTGCAATCAGAAGGCCGAAGGACAAGGGGTGGAGGCCCTTTTACGAGGAGGTTCACGATCATAAGGCTGCTAGTGCTGCTTTGGTGATCGATTATGTGGAGAAATGCTCAATATATGGATCTCTTGAGGTTGCACAATATCAAAGGGCGATTGAAGACCTGCACGCGATGAGATTTGGATATGAGGATGTAGTATTGCTCCTTTTGAAGCCAAGTCTTAGTGTGCAGATCAACCTACTCGGTTTGCATTACTGCATGAATTGGCTTAAAGTGCCGGTCAAATGTGTTGTGAAAGAACTAAGAATTAGGAAGTTAGCGGAGCGGCGAGTTTGTGTTAAATGGTGGACGCTTGGCAAATGGTCCAACGGTTACGGTATTCGCATGAATGACGAACTACATTCTCATCAATTCACATTGTTAGATGTTGCACTTGCAAGAGCAGAGGAGGTTCTTGCAGTGCTGTATCGAGGTGCTATTCATGAGGTACTACGTGTTCAGATTATGGTGGCAAAGCCCTCAAGTACACCTTCATCTTCCCTACGTATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT

Protein Analysis

300

Amino Acids

34.58

Weight (kDa)

8.76

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	57 - 96	1.4e-08	F-box-like
F-box	PF00646	57 - 94	2.8e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	673
AccII	CGCG	1 cut(s)	518
AciI	CCGC	2 cut(s)	668, 673
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	2 cut(s)	837, 874
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	2 cut(s)	506, 559
AluBI	AGCT	2 cut(s)	117, 256
AluI	AGCT	2 cut(s)	117, 256
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	2 cut(s)	365, 386
ApeKI	GCWGC	5 cut(s)	55, 94, 142, 419, 428
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	18, 387, 711
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	18, 711
BbsI	GAAGAC	3 cut(s)	38, 333, 513
BbvI	GCAGC	5 cut(s)	67, 106, 154, 406, 415
BccI	CCATC	2 cut(s)	70, 294
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	287, 423
BfuAI	ACCTGC	1 cut(s)	519
BisI	GCNGC	6 cut(s)	56, 95, 143, 420, 429, 674
BlsI	GCNGC	6 cut(s)	57, 96, 144, 421, 430, 675
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	18, 711
BmgT120I	GGNCC	3 cut(s)	18, 387, 711
BmrFI	CCNGG	1 cut(s)	170
BpiI	GAAGAC	3 cut(s)	38, 333, 513
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpuEI	CTTGAG	3 cut(s)	224, 497, 853
BpuMI	CCSGG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	842, 893
BsaWI	WCCGGW	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	441
BseGI	GGATG	1 cut(s)	544
BseMII	CTCAG	4 cut(s)	199, 321, 327, 333
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	413, 809
BseXI	GCAGC	5 cut(s)	67, 106, 154, 406, 415
BsgI	GTGCAG	2 cut(s)	497, 596
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	367, 388
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	26, 170, 626
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	367, 388
Bsp143I	GATC	4 cut(s)	409, 438, 470, 579
BspACI	CCGC	2 cut(s)	668, 673
BspANI	GGCC	2 cut(s)	367, 388
BspCNI	CTCAG	4 cut(s)	198, 322, 328, 332
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	518
BspHI	TCATGA	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	625
BssMI	GATC	4 cut(s)	409, 438, 470, 579
Bst4CI	ACNGT	2 cut(s)	719, 725
BstBAI	YACGTR	2 cut(s)	842, 893
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	6 cut(s)	185, 319, 330, 336, 569, 650
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	518
BstKTI	GATC	4 cut(s)	412, 441, 473, 582
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	409, 438, 470, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 428, 622
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	168
BstSNI	TACGTA	1 cut(s)	893
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	5 cut(s)	67, 106, 154, 406, 415
BstV2I	GAAGAC	3 cut(s)	38, 333, 513
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	367, 388
BsuTUI	ATCGAT	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	544
BtsI	GCAGTG	2 cut(s)	351, 813
BtsIMutI	CAGTG	2 cut(s)	351, 813
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	516
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	18, 387, 711
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	836, 873
CviAII	CATG	4 cut(s)	40, 607, 733, 830
CviQI	GTAC	2 cut(s)	836, 873
DdeI	CTNAG	6 cut(s)	185, 319, 330, 336, 569, 650
DpnI	GATC	4 cut(s)	411, 440, 472, 581
DpnII	GATC	4 cut(s)	409, 438, 470, 579
Eco105I	TACGTA	1 cut(s)	893
Eco47I	GGWCC	2 cut(s)	18, 711
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	314
FaeI	CATG	4 cut(s)	43, 610, 736, 833
FalI	AAGNNNNNCTT	2 cut(s)	862, 894
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	39, 606, 732, 829
Fnu4HI	GCNGC	6 cut(s)	56, 95, 143, 420, 429, 674
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	6 cut(s)	56, 95, 143, 420, 429, 674
FspBI	CTAG	2 cut(s)	287, 423
GluI	GCNGC	6 cut(s)	56, 95, 143, 420, 429, 674
HaeIII	GGCC	2 cut(s)	367, 388
HapII	CCGG	3 cut(s)	26, 170, 626
HgaI	GACGC	1 cut(s)	706
Hin1II	CATG	4 cut(s)	43, 610, 736, 833
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	4 cut(s)	281, 326, 332, 338
HpaII	CCGG	3 cut(s)	26, 170, 626
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	3 cut(s)	406, 696, 875
Hpy188I	TCNGA	8 cut(s)	188, 268, 322, 331, 337, 362, 849, 902
Hpy188III	TCNNGA	4 cut(s)	311, 407, 476, 830
Hpy8I	GTNNAC	3 cut(s)	406, 696, 875
HpyAV	CCTTC	4 cut(s)	244, 357, 364, 888
HpyCH4III	ACNGT	2 cut(s)	719, 725
HpyCH4IV	ACGT	4 cut(s)	49, 132, 841, 892
HpyCH4V	TGCA	9 cut(s)	356, 485, 514, 577, 598, 606, 779, 785, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 428, 622
HpyF3I	CTNAG	6 cut(s)	185, 319, 330, 336, 569, 650
HpySE526I	ACGT	4 cut(s)	49, 132, 841, 892
Hsp92II	CATG	4 cut(s)	43, 610, 736, 833
Kzo9I	GATC	4 cut(s)	409, 438, 470, 579
LmnI	GCTCC	3 cut(s)	253, 555, 670
LpnPI	CCDG	7 cut(s)	39, 107, 177, 183, 296, 524, 639
Lsp1109I	GCAGC	5 cut(s)	67, 106, 154, 406, 415
MaeI	CTAG	2 cut(s)	287, 423
MaeII	ACGT	4 cut(s)	49, 132, 841, 892
MaeIII	GTNAC	2 cut(s)	198, 719
MalI	GATC	4 cut(s)	411, 440, 472, 581
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	4 cut(s)	409, 438, 470, 579
MboII	GAAGA	5 cut(s)	43, 333, 339, 518, 876
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	6 cut(s)	75, 189, 314, 610, 654, 758
MlyI	GAGTC	4 cut(s)	290, 335, 341, 347
MmeI	TCCRAC	2 cut(s)	227, 738
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	618, 687
MspI	CCGG	3 cut(s)	26, 170, 626
MspR9I	CCNGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	425, 428, 622
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	409, 438, 470, 579
NlaIII	CATG	4 cut(s)	43, 610, 736, 833
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	57, 96, 144, 421, 430, 675
PleI	GAGTC	4 cut(s)	289, 334, 340, 346
PpsI	GAGTC	4 cut(s)	289, 334, 340, 346
Ppu21I	YACGTR	2 cut(s)	842, 893
PspPI	GGNCC	3 cut(s)	18, 387, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	837, 874
RsaNI	GTAC	2 cut(s)	836, 873
SaqAI	TTAA	2 cut(s)	618, 687
SatI	GCNGC	6 cut(s)	56, 95, 143, 420, 429, 674
Sau3AI	GATC	4 cut(s)	409, 438, 470, 579
Sau96I	GGNCC	3 cut(s)	18, 387, 711
SchI	GAGTC	4 cut(s)	290, 335, 341, 347
ScrFI	CCNGG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	18, 711
SmlI	CTYRAG	3 cut(s)	203, 476, 868
SmoI	CTYRAG	3 cut(s)	203, 476, 868
SnaBI	TACGTA	1 cut(s)	893
Sse9I	AATT	6 cut(s)	75, 189, 314, 610, 654, 758
SsiI	CCGC	2 cut(s)	668, 673
SspMI	CTAG	2 cut(s)	287, 423
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	719, 725
TaiI	ACGT	4 cut(s)	52, 135, 844, 895
TaqI	TCGA	2 cut(s)	441, 817
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	6 cut(s)	75, 189, 314, 610, 654, 758
TatI	WGTACW	1 cut(s)	872
TauI	GCSGC	1 cut(s)	676
Tru1I	TTAA	2 cut(s)	618, 687
Tru9I	TTAA	2 cut(s)	618, 687
TscAI	CASTG	2 cut(s)	358, 813
TseI	GCWGC	5 cut(s)	55, 94, 142, 419, 428
TspDTI	ATGAA	5 cut(s)	333, 623, 749, 818, 870
TspRI	CASTG	2 cut(s)	358, 813
VpaK11BI	GGWCC	2 cut(s)	18, 711
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	2 cut(s)	287, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.