Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012773.1

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

38595 .. 41263

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012773.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atgataaaccaggcagaagaagaagcaacgtctctttttatcatgatgcaatatgagcacggcccgcactttggatcgttgtatgaattttatttaggtaagcaagactcctttcgacctttagcacagttcagggaaaaggatattagccttccattaagttggaaattttgctccttggataccgacaacatatgtctattcccagatagtggtcctttacctcctgatgatgtggtgaaccccttgtctggatatatgttcaatgtcgataccaagaagtgtcatttaataaagccgcccgttgctcccaaatgggacggacctgttgtatctgcatatgggaaactttactctatcacggttccatactgctcatctgatgtgccagagccctctttcgagcgatatgatccttacaggtgttgttgggaaactcggaaatcttttccttatggtaaacattgctccaaacaaaggattgggggtcatgccgtttgtgatggactcatcctgtataatataatctcttctgttggactcattctggaggataatccattctcttgctctagaaaatatcaagatgaactgtgggcttatgatgtaacactggatgaatggcttccagttagggtcgagaacacagattgctatagtttccgaggaccggctgtatgtgcggacaagactatctacgcgttatcaagcagcttggcggttatggcactctctatcacaaggcatgaaaatcttgttacctgctctctaaagtcacagtttgtttgtccagagtttggggactttcgaccaggcgcacggagaatggagcgtttgatttatttgggtgacctgaacttttgtcttgttcagactggatttcggtatgacattagatccagtcaatctcttaaaattaccacatttcaccttgtgggagaaaccaatatcaaaatcgaacgttcattcattcatgaggtgcctcttgagggttgtatgagattcactattgaacattgctttataagtacttttaaacgcatggaacccgaagagataactagtcgcatcgacttcttataccaagaagacagattcggcattgatactgacttcatcatcaagccagaatatgattatctcgagatcgaccagccaaattatgcaaatattgaagaagaaaatatgtccttacaaggtggacctcatttcaaaaacttcgtggacttattgagagatttgttggcgatggcattggccaatggtttcattccggaccagaaggtatggctgtgtgtttttgctgaggacagcaaccaggatgattttgtcaaggcggaaggcatatatgagacggaacttcataaagcggttttggaggtctggaagtctctcccatcaaagctggaagtgctggaagagtctggattgtgtcgcccttttgtcttggattgtgttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

55.97

Weight (kDa)

4.88

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
Acc36I	ACCTGC	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	979
AccB7I	CCANNNNNTGG	2 cut(s)	212, 797
AccII	CGCG	1 cut(s)	701
AccIII	TCCGGA	1 cut(s)	1273
AciI	CCGC	6 cut(s)	65, 299, 683, 719, 1337, 1370
AclI	AACGTT	1 cut(s)	961
AclWI	GGATC	3 cut(s)	82, 407, 891
AcoI	YGGCCR	1 cut(s)	1257
AcsI	RAATTY	2 cut(s)	86, 167
AdeI	CACNNNGTG	1 cut(s)	934
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	7 cut(s)	71, 212, 251, 477, 670, 797, 989
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	265, 1013, 1175, 1213
AhlI	ACTAGT	1 cut(s)	1061
AjnI	CCWGG	3 cut(s)	9, 811, 1317
AluBI	AGCT	2 cut(s)	714, 1405
AluI	AGCT	2 cut(s)	714, 1405
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	36, 1346, 1395
AlwI	GGATC	3 cut(s)	82, 407, 891
Ama87I	CYCGRG	1 cut(s)	1142
Aor13HI	TCCGGA	1 cut(s)	1273
AoxI	GGCC	2 cut(s)	61, 1257
ApeKI	GCWGC	1 cut(s)	711
ApoI	RAATTY	2 cut(s)	86, 167
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	6 cut(s)	62, 215, 323, 668, 1202, 1276
AsuHPI	GGTGA	3 cut(s)	250, 860, 920
AvaI	CYCGRG	1 cut(s)	1142
AvaII	GGWCC	5 cut(s)	215, 323, 668, 1202, 1276
BalI	TGGCCA	1 cut(s)	1259
BanI	GGYRCC	1 cut(s)	979
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	1305
BbvI	GCAGC	1 cut(s)	723
BccI	CCATC	3 cut(s)	497, 1243, 1405
BceAI	ACGGC	2 cut(s)	76, 479
BciT130I	CCWGG	3 cut(s)	11, 813, 1319
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	36, 1346, 1395
BcuI	ACTAGT	1 cut(s)	1061
BfaI	CTAG	2 cut(s)	573, 1062
BfmI	CTRYAG	1 cut(s)	655
BfuAI	ACCTGC	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	299, 712
BlsI	GCNGC	2 cut(s)	300, 713
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	3 cut(s)	11, 813, 1319
Bme18I	GGWCC	5 cut(s)	215, 323, 668, 1202, 1276
BmeT110I	CYCGRG	1 cut(s)	1142
BmgT120I	GGNCC	6 cut(s)	62, 215, 323, 668, 1202, 1276
BmiI	GGNNCC	3 cut(s)	366, 981, 1047
BmrFI	CCNGG	3 cut(s)	11, 813, 1319
BmsI	GCATC	2 cut(s)	36, 1077
BpiI	GAAGAC	1 cut(s)	1095
BpmI	CTGGAG	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	1305
BpuEI	CTTGAG	1 cut(s)	1007
BsaJI	CCNNGG	2 cut(s)	177, 664
BsaWI	WCCGGW	1 cut(s)	1273
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 212, 251, 477, 670, 797, 989
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	4 cut(s)	618, 629, 880, 900
Bse3DI	GCAATG	2 cut(s)	463, 1015
BseAI	TCCGGA	1 cut(s)	1273
BseBI	CCWGG	3 cut(s)	11, 813, 1319
BseDI	CCNNGG	2 cut(s)	177, 664
BseGI	GGATG	3 cut(s)	510, 622, 1327
BseLI	CCNNNNNNNGG	7 cut(s)	71, 212, 251, 477, 670, 797, 989
BseMI	GCAATG	2 cut(s)	463, 1015
BseMII	CTCAG	1 cut(s)	1296
BseNI	ACTGG	4 cut(s)	618, 629, 880, 900
BseXI	GCAGC	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	63, 1259
BshNI	GGYRCC	1 cut(s)	979
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	1142
BsiSI	CCGG	2 cut(s)	671, 1274
BslFI	GGGAC	2 cut(s)	332, 815
BslI	CCNNNNNNNGG	7 cut(s)	71, 212, 251, 477, 670, 797, 989
BsmAI	GTCTC	3 cut(s)	36, 1346, 1395
BsmBI	CGTCTC	2 cut(s)	36, 1346
BsmFI	GGGAC	2 cut(s)	332, 815
BsnI	GGCC	2 cut(s)	63, 1259
BsoBI	CYCGRG	1 cut(s)	1142
Bsp1286I	GDGCHC	2 cut(s)	60, 396
Bsp13I	TCCGGA	1 cut(s)	1273
Bsp143I	GATC	4 cut(s)	74, 412, 896, 1146
BspACI	CCGC	6 cut(s)	65, 299, 683, 719, 1337, 1370
BspANI	GGCC	2 cut(s)	63, 1259
BspCNI	CTCAG	1 cut(s)	1297
BspEI	TCCGGA	1 cut(s)	1273
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	2 cut(s)	42, 973
BspLI	GGNNCC	3 cut(s)	366, 981, 1047
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	3 cut(s)	82, 407, 891
BspT107I	GGYRCC	1 cut(s)	979
BsrDI	GCAATG	2 cut(s)	463, 1015
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	4 cut(s)	618, 629, 880, 900
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	177, 664
BssMI	GATC	4 cut(s)	74, 412, 896, 1146
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	11, 813, 1319
Bst4CI	ACNGT	4 cut(s)	129, 364, 594, 780
Bst6I	CTCTTC	3 cut(s)	535, 1047, 1413
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	1305
BstEII	GGTNACC	1 cut(s)	848
BstF5I	GGATG	3 cut(s)	510, 622, 1327
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	4 cut(s)	77, 415, 899, 1149
BstMAI	GTCTC	3 cut(s)	36, 1346, 1395
BstMBI	GATC	4 cut(s)	74, 412, 896, 1146
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 64, 680, 725, 1411
BstNI	CCWGG	3 cut(s)	11, 813, 1319
BstPI	GGTNACC	1 cut(s)	848
BstSCI	CCNGG	3 cut(s)	9, 811, 1317
BstSFI	CTRYAG	1 cut(s)	655
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	723
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	896
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	63, 1259
BtgZI	GCGATG	1 cut(s)	1262
BtsCI	GGATG	3 cut(s)	510, 622, 1327
BtsIMutI	CAGTG	1 cut(s)	611
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	2 cut(s)	42, 973
CfoI	GCGC	1 cut(s)	818
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	6 cut(s)	62, 215, 323, 668, 1202, 1276
Csp6I	GTAC	1 cut(s)	1029
CviAII	CATG	5 cut(s)	43, 491, 746, 974, 1042
CviQI	GTAC	1 cut(s)	1029
DdeI	CTNAG	1 cut(s)	1305
DpnI	GATC	4 cut(s)	76, 414, 898, 1148
DpnII	GATC	4 cut(s)	74, 412, 896, 1146
DraI	TTTAAA	1 cut(s)	1036
DraIII	CACNNNGTG	1 cut(s)	934
EaeI	YGGCCR	1 cut(s)	1257
Eam1104I	CTCTTC	3 cut(s)	535, 1047, 1413
EarI	CTCTTC	3 cut(s)	535, 1047, 1413
EciI	GGCGGA	1 cut(s)	1352
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	5 cut(s)	215, 323, 668, 1202, 1276
Eco88I	CYCGRG	1 cut(s)	1142
Eco91I	GGTNACC	1 cut(s)	848
EcoO65I	GGTNACC	1 cut(s)	848
EcoRII	CCWGG	3 cut(s)	9, 811, 1317
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	2 cut(s)	36, 1346
FaeI	CATG	5 cut(s)	46, 494, 749, 977, 1045
FaqI	GGGAC	2 cut(s)	332, 815
FatI	CATG	5 cut(s)	42, 490, 745, 973, 1041
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	2 cut(s)	194, 340
Fnu4HI	GCNGC	2 cut(s)	299, 712
FokI	GGATG	3 cut(s)	497, 629, 1334
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	299, 712
FspBI	CTAG	2 cut(s)	573, 1062
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	2 cut(s)	299, 712
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	63, 1259
HapII	CCGG	2 cut(s)	671, 1274
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	5 cut(s)	46, 494, 749, 977, 1045
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HinfI	GANTC	6 cut(s)	107, 507, 540, 1002, 1095, 1421
HpaII	CCGG	2 cut(s)	671, 1274
HphI	GGTGA	3 cut(s)	250, 860, 920
Hpy166II	GTNNAC	4 cut(s)	241, 461, 1202, 1225
Hpy188I	TCNGA	4 cut(s)	382, 441, 665, 873
Hpy8I	GTNNAC	4 cut(s)	241, 461, 1202, 1225
HpyAV	CCTTC	3 cut(s)	161, 1276, 1334
HpyCH4III	ACNGT	4 cut(s)	129, 364, 594, 780
HpyCH4IV	ACGT	2 cut(s)	29, 961
HpyCH4V	TGCA	3 cut(s)	49, 338, 1166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 64, 680, 725, 1411
HpyF3I	CTNAG	1 cut(s)	1305
HpySE526I	ACGT	2 cut(s)	29, 961
Hsp92II	CATG	5 cut(s)	46, 494, 749, 977, 1045
HspAI	GCGC	1 cut(s)	816
Kpn2I	TCCGGA	1 cut(s)	1273
Kzo9I	GATC	4 cut(s)	74, 412, 896, 1146
LmnI	GCTCC	4 cut(s)	179, 313, 473, 829
Lsp1109I	GCAGC	1 cut(s)	723
LweI	GCATC	2 cut(s)	36, 1077
MaeI	CTAG	2 cut(s)	573, 1062
MaeII	ACGT	2 cut(s)	29, 961
MaeIII	GTNAC	4 cut(s)	607, 757, 774, 848
MalI	GATC	4 cut(s)	76, 414, 898, 1148
MboI	GATC	4 cut(s)	74, 412, 896, 1146
MboII	GAAGA	8 cut(s)	29, 32, 522, 1064, 1100, 1187, 1190, 1430
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	2 cut(s)	60, 396
MlsI	TGGCCA	1 cut(s)	1259
MluCI	AATT	4 cut(s)	86, 167, 915, 1159
MluI	ACGCGT	1 cut(s)	699
MluNI	TGGCCA	1 cut(s)	1259
MlyI	GAGTC	4 cut(s)	101, 501, 534, 1430
MmeI	TCCRAC	2 cut(s)	143, 517
Mox20I	TGGCCA	1 cut(s)	1259
MroI	TCCGGA	1 cut(s)	1273
MroXI	GAANNNNTTC	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	1259
MseI	TTAA	4 cut(s)	158, 290, 912, 1035
Msp20I	TGGCCA	1 cut(s)	1259
MspI	CCGG	2 cut(s)	671, 1274
MspR9I	CCNGG	3 cut(s)	11, 813, 1319
MvaI	CCWGG	3 cut(s)	11, 813, 1319
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	5 cut(s)	55, 64, 680, 725, 1411
NdeI	CATATG	2 cut(s)	194, 340
NdeII	GATC	4 cut(s)	74, 412, 896, 1146
NlaIII	CATG	5 cut(s)	46, 494, 749, 977, 1045
NlaIV	GGNNCC	3 cut(s)	366, 981, 1047
NmuCI	GTSAC	2 cut(s)	774, 848
PaeR7I	CTCGAG	1 cut(s)	1142
PagI	TCATGA	2 cut(s)	42, 973
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	1002, 1095
PflMI	CCANNNNNTGG	2 cut(s)	212, 797
PkrI	GCNGC	2 cut(s)	300, 713
PleI	GAGTC	4 cut(s)	101, 501, 534, 1429
PpsI	GAGTC	4 cut(s)	101, 501, 534, 1429
PsiI	TTATAA	1 cut(s)	1025
Psp1406I	AACGTT	1 cut(s)	961
Psp6I	CCWGG	3 cut(s)	9, 811, 1317
PspEI	GGTNACC	1 cut(s)	848
PspGI	CCWGG	3 cut(s)	9, 811, 1317
PspN4I	GGNNCC	3 cut(s)	366, 981, 1047
PspPI	GGNCC	6 cut(s)	62, 215, 323, 668, 1202, 1276
PsuI	RGATCY	1 cut(s)	896
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
SaqAI	TTAA	4 cut(s)	158, 290, 912, 1035
SatI	GCNGC	2 cut(s)	299, 712
Sau3AI	GATC	4 cut(s)	74, 412, 896, 1146
Sau96I	GGNCC	6 cut(s)	62, 215, 323, 668, 1202, 1276
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	4 cut(s)	101, 501, 534, 1430
ScrFI	CCNGG	3 cut(s)	11, 813, 1319
SduI	GDGCHC	2 cut(s)	60, 396
SfaNI	GCATC	2 cut(s)	36, 1077
SfcI	CTRYAG	1 cut(s)	655
Sfr274I	CTCGAG	1 cut(s)	1142
SinI	GGWCC	5 cut(s)	215, 323, 668, 1202, 1276
SlaI	CTCGAG	1 cut(s)	1142
SmlI	CTYRAG	2 cut(s)	986, 1142
SmoI	CTYRAG	2 cut(s)	986, 1142
SpeI	ACTAGT	1 cut(s)	1061
Sse9I	AATT	4 cut(s)	86, 167, 915, 1159
SsiI	CCGC	6 cut(s)	65, 299, 683, 719, 1337, 1370
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	2 cut(s)	573, 1062
StyD4I	CCNGG	3 cut(s)	9, 811, 1317
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	129, 364, 594, 780
TaiI	ACGT	2 cut(s)	32, 964
TaqI	TCGA	9 cut(s)	115, 270, 402, 639, 808, 957, 1071, 1143, 1149
TasI	AATT	4 cut(s)	86, 167, 915, 1159
TatI	WGTACW	1 cut(s)	1028
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	1002, 1095
Tru1I	TTAA	4 cut(s)	158, 290, 912, 1035
Tru9I	TTAA	4 cut(s)	158, 290, 912, 1035
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	2 cut(s)	774, 848
TseI	GCWGC	1 cut(s)	711
Tsp45I	GTSAC	2 cut(s)	774, 848
TspGWI	ACGGA	3 cut(s)	336, 835, 1370
TspRI	CASTG	1 cut(s)	618
Van91I	CCANNNNNTGG	2 cut(s)	212, 797
VpaK11BI	GGWCC	5 cut(s)	215, 323, 668, 1202, 1276
XapI	RAATTY	2 cut(s)	86, 167
XbaI	TCTAGA	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	573, 1062
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.