Rroxscaffold_5G00335160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004882
Physical Location & Seq
Forward (+)
2610047 .. 2614557
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335160.1

Sequence Viewer

Length: 408 bp
ATGGGTTCAAGCACAAATTCAGGAGCTAGAAGAGGCTGTTGTGCAGATGCAAATGTCGATGCTACTCATAGTGCACTCGACAAGAGCTCTAGTTTTGTTTTATGCAATGATGAAGTGAAATTAGTGAAGATTGATGGAAATTTGGAGGTCATGAAAGAGAATATTAGGCATTGGAGAATGATGAAAGATTTTCAGAGACTTGGAGTCACCGTTTGTGATTACTTTCTTGATCCAAAAATCATAGATTGGGAACGAAGGGACAACTTCTTGAAATGCTTCGATAGGCTAACTAATATGGAGAAATTGACTAAGGAGAGGTTTGCTCAAGGAAAGATCCGAGTGAGGTATAATCCCTTGGAGATACAATCTATTCGAGGCACAATGTCTTCGAATAAGAATTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.57

Weight (kDa)

9.06

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 224, 328
AcsI RAATTY 3 cut(s) 16, 139, 397
AgsI TTSAA 2 cut(s) 9, 271
AhdI GACNNNNNGTC 1 cut(s) 203
AluBI AGCT 2 cut(s) 26, 87
AluI AGCT 2 cut(s) 26, 87
Alw21I GWGCWC 2 cut(s) 76, 89
Alw26I GTCTC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 2 cut(s) 224, 328
ApaLI GTGCAC 1 cut(s) 72
ApoI RAATTY 3 cut(s) 16, 139, 397
Asp700I GAANNNNTTC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 2 cut(s) 76, 89
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 3 cut(s) 27, 90, 406
BmeRI GACNNNNNGTC 1 cut(s) 203
BmsI GCATC 2 cut(s) 37, 49
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 307, 339
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 76, 89
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 76, 89
Bsp143I GATC 2 cut(s) 229, 333
BspHI TCATGA 1 cut(s) 150
BspPI GGATC 2 cut(s) 224, 328
BspT104I TTCGAA 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 229, 333
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 2 cut(s) 232, 336
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 229, 333
BstSLI GKGCMC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
CciI TCATGA 1 cut(s) 150
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 26, 36, 87, 286
CviKI_1 RGCY 4 cut(s) 26, 36, 87, 286
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 231, 335
DpnII GATC 2 cut(s) 229, 333
DriI GACNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 69, 103, 152, 242, 296, 348
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 3 cut(s) 27, 90, 406
Hin1II CATG 1 cut(s) 154
HinfI GANTC 1 cut(s) 204
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 195, 338
Hpy188III TCNNGA 4 cut(s) 21, 151, 227, 268
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 44, 50, 74, 105
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 2 cut(s) 229, 333
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 6
LweI GCATC 2 cut(s) 37, 49
MaeI CTAG 3 cut(s) 27, 90, 406
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 231, 335
MboI GATC 2 cut(s) 229, 333
MboII GAAGA 3 cut(s) 42, 139, 378
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 76, 89
MluCI AATT 5 cut(s) 16, 119, 139, 302, 397
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 5 cut(s) 26, 139, 309, 336, 368
MroXI GAANNNNTTC 1 cut(s) 275
NdeII GATC 2 cut(s) 229, 333
NlaIII CATG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 1 cut(s) 389
PagI TCATGA 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 275
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 333
SacI GAGCTC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 229, 333
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 2 cut(s) 76, 89
SetI ASST 5 cut(s) 28, 89, 150, 320, 347
SfaNI GCATC 2 cut(s) 37, 49
SfuI TTCGAA 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 5 cut(s) 16, 119, 139, 302, 397
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 27, 90, 406
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 5 cut(s) 57, 78, 279, 373, 389
TasI AATT 5 cut(s) 16, 119, 139, 302, 397
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 126, 167, 197
VneI GTGCAC 1 cut(s) 72
XapI RAATTY 3 cut(s) 16, 139, 397
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 27, 90, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.