Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004882

Physical Location & Seq

Genomic Coordinates Reverse (-)

1953174 .. 1954214

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATAAACCAGGCAGAAGAAGAAGCAACGTCTCTTTATATCATGATGCAATATGAGCACGGCCCGCACTTTGGATCGTTGTATGAATTTTATTTATGTAAGCGAGACTCCTTTCGACCTTTTCGACCTTTAGCACAGTTCAGGGAAAAGGATATTAGCCTTCCATTAAGTTGGAAATTTTGCTCCTTGGATACCGACAACATATGTCTATTCCCAGATAGTGGTCCTTTACCTCCTGATGATGTGGTGAACCCCTTGTCTGGATATATGTTCAATGTCGATACCAAGAAGTGTCATTTAATCAAGCCGCCCGTTGCTCCCAAATGGGACGGACCTGTTGTATCTGCATATGGGAAACTTTACTCTATCACGGTTCCATACTGCTCATCTGATGTGCCAGAGCCCTCTTTCGAGCGATATGATCCTTCCAGGTGTTGTTGGGAAACTCGTAAATCTTTTCCTTATGGTAAAGATTGGTCCAAACGAAGGATCGGGGGTCATGCCGTTTGTGATGGACTCATCCTGTATAATATAATCTCTTCTGTTGGACTCATTCTGGAGGATAATCCATTCTCTTGCTCTAGAAAATATCAAGATGAACTGTGGGCTTATGATGTAACACTGGATGAATGGCTTCCAGTTAGGGTCGAGAACACAGATTGCTATAGTTTCCGAGGACCGGCTGTATGTGCGGACAAGACTATCTATGCGTTATCAAGCAGCTTGGTGGTTATGGCACTCTCTATCACAAGGCATGAAAATCTTGTTACCTGCTCTCTAAAGTCACAGTTTGTTTGTCCAGAGTTTGGGGACTTTCGACCAGGCGCACGGAGAATGGAGCGTTTGATTTATTTGGGTGACCTGAACTTTTGTCTTGTTCAGACTGGATTTCGGTATGACATTAGATCCAGTCAATCTATTAAAATTACCACATTTCACCTTGTGGGAGAAACCAATATCAAAATCGAACGTTCATTCATTCATGAGGTGCCTCTTGAGGGTTGTATGAGATTCACTATTGAACATTGCTTTATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

39.83

Weight (kDa)

5.94

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004882)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0388551 RchiOBHm_Chr4g0388751 RchiOBHm_Chr7g0179921
rosa_laevigata	RLG00000005309 RLG00000010024 RLG00000010025
rosa_multiflora	Rmu_co8020300.1_g000001 Rmu_sc0002357.1_g000019 Rmu_sc0012773.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273310 Rroxscaffold_5G00334840 Rroxscaffold_5G00335160 Rroxscaffold_5G00353800
rosa_rugosa	Rorug06G0429200
rosa_samantha	Rh4AG022900 Rh4AG024400 Rh4AG024500 Rh4BG016700 Rh4CG025500 Rh4CG027100 Rh4CG028500 Rh4DG018400 Rh7AG029500 Rh7AG029600 Rh7BG028700 Rh7BG028800 Rh7CG030400 Rh7DG029800
rosa_wichuraiana	Rw4G001610 Rw4G001750 Rw7G002370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	988
AccB7I	CCANNNNNTGG	2 cut(s)	221, 806
AciI	CCGC	3 cut(s)	65, 308, 692
AclI	AACGTT	1 cut(s)	970
AclWI	GGATC	4 cut(s)	82, 416, 497, 900
AcsI	RAATTY	2 cut(s)	86, 176
AdeI	CACNNNGTG	1 cut(s)	943
AfiI	CCNNNNNNNGG	7 cut(s)	71, 221, 260, 486, 679, 806, 998
AgsI	TTSAA	2 cut(s)	274, 1022
AjnI	CCWGG	3 cut(s)	9, 428, 820
AluBI	AGCT	1 cut(s)	723
AluI	AGCT	1 cut(s)	723
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	36, 99
AlwI	GGATC	4 cut(s)	82, 416, 497, 900
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	720
ApoI	RAATTY	2 cut(s)	86, 176
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	5 cut(s)	62, 224, 332, 477, 677
AsuHPI	GGTGA	3 cut(s)	259, 869, 929
AvaII	GGWCC	4 cut(s)	224, 332, 477, 677
BanI	GGYRCC	1 cut(s)	988
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	732
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	2 cut(s)	76, 488
BciT130I	CCWGG	3 cut(s)	11, 430, 822
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	36, 99
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	308, 721
BlsI	GCNGC	2 cut(s)	309, 722
Bme1390I	CCNGG	3 cut(s)	11, 430, 822
Bme18I	GGWCC	4 cut(s)	224, 332, 477, 677
BmgT120I	GGNCC	5 cut(s)	62, 224, 332, 477, 677
BmiI	GGNNCC	2 cut(s)	375, 990
BmrFI	CCNGG	3 cut(s)	11, 430, 822
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	1016
BsaJI	CCNNGG	2 cut(s)	186, 673
BsaWI	WCCGGW	1 cut(s)	1035
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 221, 260, 486, 679, 806, 998
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	4 cut(s)	627, 638, 889, 909
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	11, 430, 822
BseDI	CCNNGG	2 cut(s)	186, 673
BseGI	GGATG	2 cut(s)	519, 631
BseLI	CCNNNNNNNGG	7 cut(s)	71, 221, 260, 486, 679, 806, 998
BseMI	GCAATG	1 cut(s)	1024
BseNI	ACTGG	4 cut(s)	627, 638, 889, 909
BseXI	GCAGC	1 cut(s)	732
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	988
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	680, 1036
BslFI	GGGAC	2 cut(s)	341, 824
BslI	CCNNNNNNNGG	7 cut(s)	71, 221, 260, 486, 679, 806, 998
BsmAI	GTCTC	2 cut(s)	36, 99
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	341, 824
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	60, 405
Bsp143I	GATC	4 cut(s)	74, 421, 489, 905
BspACI	CCGC	3 cut(s)	65, 308, 692
BspANI	GGCC	1 cut(s)	63
BspHI	TCATGA	2 cut(s)	42, 982
BspLI	GGNNCC	2 cut(s)	375, 990
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	4 cut(s)	82, 416, 497, 900
BspT107I	GGYRCC	1 cut(s)	988
BsrDI	GCAATG	1 cut(s)	1024
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	4 cut(s)	627, 638, 889, 909
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	186, 673
BssMI	GATC	4 cut(s)	74, 421, 489, 905
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	11, 430, 822
Bst4CI	ACNGT	4 cut(s)	138, 373, 603, 789
Bst6I	CTCTTC	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	519, 631
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	4 cut(s)	77, 424, 492, 908
BstMAI	GTCTC	2 cut(s)	36, 99
BstMBI	GATC	4 cut(s)	74, 421, 489, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 689
BstNI	CCWGG	3 cut(s)	11, 430, 822
BstPI	GGTNACC	1 cut(s)	857
BstSCI	CCNGG	3 cut(s)	9, 428, 820
BstSFI	CTRYAG	1 cut(s)	664
BstV1I	GCAGC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	905
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	519, 631
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	2 cut(s)	42, 982
CfoI	GCGC	1 cut(s)	827
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	5 cut(s)	62, 224, 332, 477, 677
CviAII	CATG	4 cut(s)	43, 500, 755, 983
CviJI	RGCY	8 cut(s)	63, 159, 307, 403, 608, 634, 683, 723
CviKI_1	RGCY	8 cut(s)	63, 159, 307, 403, 608, 634, 683, 723
DpnI	GATC	4 cut(s)	76, 423, 491, 907
DpnII	GATC	4 cut(s)	74, 421, 489, 905
DraIII	CACNNNGTG	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	4 cut(s)	224, 332, 477, 677
Eco91I	GGTNACC	1 cut(s)	857
EcoO65I	GGTNACC	1 cut(s)	857
EcoRII	CCWGG	3 cut(s)	9, 428, 820
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	4 cut(s)	46, 503, 758, 986
FaqI	GGGAC	2 cut(s)	341, 824
FatI	CATG	4 cut(s)	42, 499, 754, 982
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	2 cut(s)	203, 349
Fnu4HI	GCNGC	2 cut(s)	308, 721
FokI	GGATG	2 cut(s)	506, 638
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	308, 721
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	2 cut(s)	308, 721
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	680, 1036
HhaI	GCGC	1 cut(s)	827
Hin1II	CATG	4 cut(s)	46, 503, 758, 986
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HinfI	GANTC	4 cut(s)	107, 516, 549, 1011
HpaII	CCGG	2 cut(s)	680, 1036
HphI	GGTGA	3 cut(s)	259, 869, 929
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	391, 674, 882
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	3 cut(s)	170, 435, 480
HpyCH4III	ACNGT	4 cut(s)	138, 373, 603, 789
HpyCH4IV	ACGT	2 cut(s)	29, 970
HpyCH4V	TGCA	2 cut(s)	49, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 689
HpySE526I	ACGT	2 cut(s)	29, 970
Hsp92II	CATG	4 cut(s)	46, 503, 758, 986
HspAI	GCGC	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	74, 421, 489, 905
LmnI	GCTCC	3 cut(s)	188, 322, 838
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	2 cut(s)	29, 970
MaeIII	GTNAC	4 cut(s)	616, 766, 783, 857
MalI	GATC	4 cut(s)	76, 423, 491, 907
MboI	GATC	4 cut(s)	74, 421, 489, 905
MboII	GAAGA	3 cut(s)	29, 32, 531
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	2 cut(s)	60, 405
MluCI	AATT	3 cut(s)	86, 176, 924
MlyI	GAGTC	3 cut(s)	101, 510, 543
MmeI	TCCRAC	2 cut(s)	152, 526
MnlI	CCTC	7 cut(s)	243, 415, 553, 668, 979, 991, 1002
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	167, 299, 921
MspI	CCGG	2 cut(s)	680, 1036
MspR9I	CCNGG	3 cut(s)	11, 430, 822
MvaI	CCWGG	3 cut(s)	11, 430, 822
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 689
NdeI	CATATG	2 cut(s)	203, 349
NdeII	GATC	4 cut(s)	74, 421, 489, 905
NlaIII	CATG	4 cut(s)	46, 503, 758, 986
NlaIV	GGNNCC	2 cut(s)	375, 990
NmuCI	GTSAC	2 cut(s)	783, 857
PagI	TCATGA	2 cut(s)	42, 982
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	1011
PflMI	CCANNNNNTGG	2 cut(s)	221, 806
PkrI	GCNGC	2 cut(s)	309, 722
PleI	GAGTC	3 cut(s)	101, 510, 543
PpsI	GAGTC	3 cut(s)	101, 510, 543
Psp1406I	AACGTT	1 cut(s)	970
Psp6I	CCWGG	3 cut(s)	9, 428, 820
PspEI	GGTNACC	1 cut(s)	857
PspGI	CCWGG	3 cut(s)	9, 428, 820
PspN4I	GGNNCC	2 cut(s)	375, 990
PspPI	GGNCC	5 cut(s)	62, 224, 332, 477, 677
PsuI	RGATCY	1 cut(s)	905
SaqAI	TTAA	3 cut(s)	167, 299, 921
SatI	GCNGC	2 cut(s)	308, 721
Sau3AI	GATC	4 cut(s)	74, 421, 489, 905
Sau96I	GGNCC	5 cut(s)	62, 224, 332, 477, 677
SchI	GAGTC	3 cut(s)	101, 510, 543
ScrFI	CCNGG	3 cut(s)	11, 430, 822
SduI	GDGCHC	2 cut(s)	60, 405
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	664
SinI	GGWCC	4 cut(s)	224, 332, 477, 677
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	3 cut(s)	86, 176, 924
SsiI	CCGC	3 cut(s)	65, 308, 692
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	3 cut(s)	9, 428, 820
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	138, 373, 603, 789
TaiI	ACGT	2 cut(s)	32, 973
TaqI	TCGA	7 cut(s)	115, 124, 279, 411, 648, 817, 966
TasI	AATT	3 cut(s)	86, 176, 924
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	1011
Tru1I	TTAA	3 cut(s)	167, 299, 921
Tru9I	TTAA	3 cut(s)	167, 299, 921
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	783, 857
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	2 cut(s)	783, 857
TspDTI	ATGAA	7 cut(s)	99, 612, 642, 771, 963, 967, 971
TspGWI	ACGGA	2 cut(s)	345, 844
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	2 cut(s)	221, 806
VpaK11BI	GGWCC	4 cut(s)	224, 332, 477, 677
XapI	RAATTY	2 cut(s)	86, 176
XbaI	TCTAGA	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.